Article

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

Silva, Goncalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:https://doi.org/10.3389/fpls.2022.846989)

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan ORCID: 0000-0002-3952-1562 and Luan, Jun-Bo (2021) Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11):e1010120. ISSN 1553-7366 (Print), 1553-7374 (Online) (doi:https://doi.org/10.1371/journal.ppat.1010120)

Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert ORCID: 0000-0002-7437-1934 , Wagner, Thomas, Seal, Susan ORCID: 0000-0002-3952-1562 , Kriticos, Darren J. and Otim, Michael H. (2021) Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda. Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048. pp. 1-12. ISSN 2075-4450 (Print), 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12111048)

Fan, Yun yun, Zhong, Yu-Wei, Zhao, Jing, Chi, Yao, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Liu, Shu-Sheng, Seal, Susan E. ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2021) Bemisia tabaci vesicle-associated membrane protein 2 interacts with begomoviruses and plays a role in virus acquisition. Cells, 10 (7):1700. ISSN 2073-4409 (Online) (doi:https://doi.org/10.3390/cells10071700)

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Sseruwagi, Peter, Colvin, John and Seal, Susan ORCID: 0000-0002-3952-1562 (2021) Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species? Insects, 12 (3):260. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12030260)

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Colvin, John ORCID: 0000-0001-6413-580X , Alicai, Titus ORCID: 0000-0002-4489-3133 , Omongo, Christopher A., Kabaalu, Richard, Visendi, Paul ORCID: 0000-0001-7114-7710 , Sseruwagi, Peter ORCID: 0000-0002-4128-0294 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2021) Genetic diversity of whitefly (Bemisia spp.) on crop and uncultivated plants in Uganda: implications for the control of this devastating pest species complex in Africa. Journal of Pest Science, 94 (4). pp. 1307-1330. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-021-01355-6)

James, Amy M., Seal, Susan E. ORCID: 0000-0002-3952-1562 , Bailey, Andy M. ORCID: 0000-0002-7594-3703 and Foster, Gary D. ORCID: 0000-0002-1979-1397 (2021) Viral inosine triphosphatase: A mysterious enzyme with typical activity, but an atypical function. Molecular Plant Pathology, 22 (3). pp. 382-389. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:https://doi.org/10.1111/mpp.13021)

Kriticos, Darren J., Darnell, Ross E., Yonow, Tania, Ota, Noboru, Sutherst, Robert W., Parry, Hazel R., Mugerwa, Habibu, Maruthi, M.N. ORCID: 0000-0002-8060-866X , Seal, Susan E. ORCID: 0000-0002-3952-1562 , Colvin, John, Macfadyen, Sarina, Kalyebi, Andrew, Hulthen, Andrew and De Barro, Paul J. (2020) Improving climate suitability for Bemisia tabaci in East Africa is correlated with increased prevalence of whiteflies and cassava diseases. Scientific reports, 10 (1):22049. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-79149-6)

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2020) Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies. Insect Science, 28 (6). pp. 1553-1566. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.12881)

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 , Stavolone, Livia and Umber, Marie (2020) ICTV virus taxonomy profile: caulimoviridae. Journal of General Virology, 101 (10). pp. 1025-1026. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:https://doi.org/10.1099/jgv.0.001497)

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Seal, Susan ORCID: 0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:https://doi.org/10.1016/j.cpb.2020.100156)

Nwezeobi, Joachim ORCID: 0000-0002-7541-9186 , Onyegbule, Onyeyirichi, Nkere, Chukwuemeka ORCID: 0000-0002-1212-0785 , Onyeka, Joseph, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2020) Cassava whitefly species in eastern Nigeria and the threat of vector-borne pandemics from East and Central Africa. PLoS ONE, 15 (5):e0232616. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0232616)

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

Chi, Yao, Pan, Li-Long, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2019) Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 15. pp. 141-149. ISSN 0042-6822 (doi:https://doi.org/10.1016/j.virol.2019.11.013)

Tomlinson, Katie R., Seal, Susan E. ORCID: 0000-0002-3952-1562 , Bailey, Andy M. and Foster, Gary D. ORCID: 0000-0002-1979-1397 (2019) Utilization of infectious clones to visualize Cassava brown streak virus replication in planta and gain insights into symptom development. Virus Genes, 55 (6). pp. 825-833. ISSN 0920-8569 (Print), 1572-994X (Online) (doi:https://doi.org/10.1007/s11262-019-01697-5)

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

Tomlinson, Katie R., Pablo-Rodriguez, José Luis, Bunawan, Hamidun, Nanyit, Sarah, Green, Patrick, Miller, Josie, Seal, Susan E. ORCID: 0000-0002-3952-1562 , Bailey, Andy M. and Foster, Gary D. (2019) Cassava brown streak virus Ham1 protein hydrolyses mutagenic nucleotides and is a necrosis determinant. Molecular Plant Pathology, 20 (8). pp. 1080-1092. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:https://doi.org/10.1111/mpp.12813)

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

Duff-Farrier, C. R. A., Mbanzibwa, D. R., Nanyiti, S., Bunawan, H., Pablo-Rodriguez, J. L., Tomlinson, K. R., James, A. M., Alicai, T., Seal, S. E. ORCID: 0000-0002-3952-1562 , Bailey, A. M. and Foster, G. D. (2018) Strategies for the construction of cassava brown streak disease viral infectious clones. Molecular Biotechnology, 61 (2). pp. 93-101. ISSN 1073-6085 (Print), 1559-0305 (Online) (doi:https://doi.org/10.1007/s12033-018-0139-7)

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

Silva, G. ORCID: 0000-0001-5544-2947 , Lecourt, J., Clover, G.R.G. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2018) First record of Grapevine Pinot gris virus infecting Vitis vinifera in the United Kingdom. New Disease Reports, 38 (7). ISSN 2044-0588 (Online) (doi:https://doi.org/10.5197/j.2044-0588.2018.038.007)

Vyskočilová, Soňa, Tay, Wee Tek, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2018) An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex. Scientific Reports, 8:10886. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-29305-w)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:https://doi.org/10.1016/j.pmpp.2018.06.003)

Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 , Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H. (2018) Ortervirales: A new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92 (12). 00515-00518. ISSN 0022-538X (Print), 1098-5514 (Online) (doi:https://doi.org/10.1128/JVI.00515-18)

Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan ORCID: 0000-0002-3952-1562 , Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter (2018) Review and guide to a future naming system of African Bemisia tabaci species. Systematic Entomology, 43 (3). pp. 427-433. ISSN 0307-6970 (Print), 1365-3113 (Online) (doi:https://doi.org/10.1111/syen.12294)

Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Wang, Hua-Ling, Patel, Mitulkumar V., Kabaalu, Richard, Omongo, Christopher A., Alicai, Titus, Tairo, Fred, Ndunguru, Joseph, Sseruwagi, Peter and Colvin, John (2018) African ancestry of New World, Bemisia tabaci-whitefly species. Scientific Reports, 8 (1):2734. ISSN 2045-2322 (Print), 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-20956-3)

Brewer, Helen C., Hird, Diane L., Bailey, Andy M., Seal, Susan E. ORCID: 0000-0002-3952-1562 and Foster, Gary D. (2018) A guide to the contained use of plant virus infectious clones. Plant Biotechnology Journal, 16 (4). pp. 832-843. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12876)

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Kumar, Lava P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:https://doi.org/10.1016/j.ab.2018.01.019)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Silva, G. ORCID: 0000-0001-5544-2947 , Lecourt, J., Clover, G.R.G. and Seal, S. E. ORCID: 0000-0002-3952-1562 (2017) First report of Grapevine fanleaf virus infecting grapevine in the United Kingdom. New Disease Reports, 36 (9). ISSN 2044-0588 (Online) (doi:https://doi.org/10.5197/j.2044-0588.2017.036.009)

Tomlinson, Katie R., Bailey, Andy M., Alicai, Titus, Seal, Sue ORCID: 0000-0002-3952-1562 and Foster, Gary D. (2017) Cassava brown streak disease: historical timeline, current knowledge and future prospects. Molecular Plant Pathology. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:https://doi.org/10.1111/mpp.12613)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Al-Kuwaiti, N.A., Maruthi, M.N. ORCID: 0000-0002-8060-866X and Seal, S.E. ORCID: 0000-0002-3952-1562 (2016) Molecular characterization of potyviruses infecting potato and vegetables in Iraq. Journal of Plant Pathology: An International Journal of the Italian Phytopathological Society, 98 (3). ISSN 1125-4653 (doi:https://doi.org/10.4454/JPP.V98I3.029)

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:https://doi.org/10.1016/j.jviromet.2015.06.011)

Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan ORCID: 0000-0002-3952-1562 (2014) Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR. Journal of Insect Science, 14 (1):63. pp. 1-25. ISSN 1536-2442 (doi:https://doi.org/10.1673/031.014.63)

Umber, Marie, Filloux, Denis, Muller, Emmanuelle, Laboureau, Nathalie, Galzi, Serge, Roumagnac, Philippe, Iskra-Caruana, Marie-Line, Pavis, Claudie, Teycheney, Pierre-Yves and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2014) The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Molecular Plant Pathology, 15 (8). pp. 790-801. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:https://doi.org/10.1111/mpp.12137)

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

Al-Kuwaiti, N., Otto, B., Collins, C., Seal, S. ORCID: 0000-0002-3952-1562 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2013) Molecular characterisation and first complete genome sequence of Tomato yellow leaf curl virus (TYLCV) infecting tomato in Iraq. New Disease Reports, 27:17. ISSN 2044-0588 (doi:https://doi.org/10.5197/j.2044-0588.2013.027.017)

Chowda-Reddy, R.V., Kirankumar, M., Seal, Susan E. ORCID: 0000-0002-3952-1562 , Muniyappa, V., Valand, Girish B., Govindappa, M.R. and Colvin, John (2012) Bemisia tabaci phylogenetic groups in India and the relative transmission efficacy of Tomato leaf curl Bangalore virus by an indigenous and an exotic population. Journal of Integrative Agriculture, 11 (2). pp. 235-248. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60008-2)

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

Abarshi, M.M., Mohammed, I.U., Wasswa, P., Hillocks, R.J., Holt, J., Legg, J.P., Seal, S.E. ORCID: 0000-0002-3952-1562 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2009) Optimization of diagnostic RT-PCR protocols and sampling procedures for the reliable and cost-effective detection of Cassava brown streak virus. Journal of Virological Methods, 163 (2). pp. 353-359. ISSN 0166-0934 (doi:https://doi.org/10.1016/j.jviromet.2009.10.023)

Fahleson, J., Nakyanzi, M., Okori, P., Seal, S. ORCID: 0000-0002-3952-1562 , Kenyon, L. and Dixelius, C. (2009) Genetic analysis of Mycosphaerella fijiensis in the Ugandan Lake Victoria region reveals a homogenous population. Plant Pathology, 58 (5). pp. 888-897. ISSN 1365-3059 (online) (doi:https://doi.org/10.1111/j.1365-3059.2009.02099.x)

Bousalem, Mustapha, Durand, O., Scarcelli, N., Lebas, B.S.M., Kenyon, L., Marchand, J.-L., Lefort, F. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2009) Dilemmas caused by endogenous pararetroviruses regarding the taxonomy and diagnosis of yam (Dioscorea spp.) badnaviruses: Analyses to support safe germplasm movement. Archives of Virology, 154 (2). pp. 297-314. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-009-0311-2)

Bousalem, M., Douzery, E.J.P. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2008) Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences. Archives of Virology, 153 (6). pp. 1085-1102. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-008-0095-9)

Kenyon, Lawrence, Lebas, B.S.M. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2008) Yams (Dioscorea spp.) from the South Pacific Islands contain many novel badnaviruses: Implications for international movement of yam germplasm. Archives of Virology, 153 (5). pp. 877-889. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-008-0062-5)

Monger, W.A., Harju, V., Skelton, A., Seal, Susan ORCID: 0000-0002-3952-1562 and Mumford, R.A. (2007) Brief Report: Canna yellow streak virus: a new potyvirus associated with severe streaking symptoms in canna. Archives of Virology, 152 (8). pp. 1527-1530. ISSN 0304-8608 (doi:https://doi.org/10.1007/s00705-007-0977-2)

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

Rajeshwari, R., Reddy, R.V.C., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Colvin, J., Seal, S.E. ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2005) Host range, vector relationships and sequence comparison of a begomovirus infecting hibiscus in India. Annals of Applied Biology, 147 (1). pp. 15-25. ISSN 0003-4746 (doi:https://doi.org/10.1111/j.1744-7348.2005.00005.x)

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Colvin, John, Gibson, Gabriella, Thwaites, Richard M., Banks, Gina K. and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2004) Reproductive incompatibility and cytochrome oxidase I gene sequence variability amongst host-adapted and geographically separate Bemisia tabaci populations (Hemiptera: Aleyrodidae). Systematic Entomology, 29 (4). pp. 560-568. ISSN 0307-6970 (doi:https://doi.org/10.1111/j.0307-6970.2004.00272.x)

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Seal, S. ORCID: 0000-0002-3952-1562 , Colvin, J., Briddon, R.W. and Bull, S.E. (2004) East African cassava mosaic Zanzibar virus – a recombinant begomovirus species with a mild phenotype. Archives of Virology, 149 (12). pp. 2365-2377. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-004-0380-1)

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Colvin, J., Seal, S. ORCID: 0000-0002-3952-1562 , Gibson, G. and Cooper, J. (2002) Co-adaptation between cassava mosaic geminiviruses and their local vector populations. Virus Research, 86 (1-2). pp. 71-85. ISSN 0168-1702 (doi:https://doi.org/10.1016/S0168-1702(02)00051-5)

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Colvin, J., Seal, S. ORCID: 0000-0002-3952-1562 and Thresh, J.M. (2002) First report of a distinct begomovirus infecting cassava in Zanzibar. Plant Disease, 86 (2). p. 187. ISSN 0191-2917 (doi:https://doi.org/10.1094/PDIS.2002.86.2.187A)

Banks, G.K., Colvin, J., Chowda, Reddy R.V., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Muniyappa, V., Venkatesh, H.M., Kiran Kumar, M., Padmaja, A.S., Beitia, F.J. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2001) First report of the Bemisia tabaci B biotype in India and an associated tomato leaf curl virus disease epidemic. Plant Disease, 85 (2). p. 231. ISSN 0191-2917 (doi:https://doi.org/10.1094/PDIS.2001.85.2.231C)

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Colvin, J. and Seal, S. ORCID: 0000-0002-3952-1562 (2001) Mating compatibility, life-history traits, and RAPD-PCR variation in Bemisia tabaci associated with the cassava mosaic disease pandemic in East Africa. Entomologia Experimentalis et Applicata, 99 (1). pp. 13-23. ISSN 0013-8703 (doi:https://doi.org/10.1046/j.1570-7458.2001.00797.x)

Book Section

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Seal, Susan ORCID: 0000-0002-3952-1562 , Sangare, A. and Makinde, M. (2008) Crop biotechnology and biosafety. SCARDA Briefing Papers Strengthening Capacity for Agricultural Research and Development in Africa. Forum for Agricultural Research in Africa, Accra, pp. 24-32. ISBN 978-9988-1-1063-4

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

Monograph

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)