Items where Author is "Seal, Susan"
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abundance
Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert
ORCID: 0000-0002-7437-1934
, Wagner, Thomas, Seal, Susan
ORCID: 0000-0002-3952-1562
, Kriticos, Darren J. and Otim, Michael H.
(2021)
Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda.
Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048.
pp. 1-12.
ISSN 2075-4450 (Print), 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12111048)
Africa
Black, Robert
ORCID: 0000-0001-6596-882X
, Fava, Fabio, Mattei, Niccolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Verdier, Valerie
(2011)
Case studies on the use of biotechnologies and on biosafety provisions in four African countries.
Journal of Biotechnology, 156 (4).
pp. 370-381.
ISSN 0168-1656
(doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)
agricultural pests and plant-virus disease vectors
Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Wang, Hua-Ling, Patel, Mitulkumar V., Kabaalu, Richard, Omongo, Christopher A., Alicai, Titus, Tairo, Fred, Ndunguru, Joseph, Sseruwagi, Peter and Colvin, John
(2018)
African ancestry of New World, Bemisia tabaci-whitefly species.
Scientific Reports, 8 (1):2734.
ISSN 2045-2322 (Print), 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-018-20956-3)
agro-ecological regions
Namuddu, Annet, Seal, Susan
ORCID: 0000-0002-3952-1562
, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John
(2023)
Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas.
Frontiers in Sustainable Food Systems, 7:106810.
pp. 1-15.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1068109)
agro-ecological zone
Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert
ORCID: 0000-0002-7437-1934
, Wagner, Thomas, Seal, Susan
ORCID: 0000-0002-3952-1562
, Kriticos, Darren J. and Otim, Michael H.
(2021)
Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda.
Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048.
pp. 1-12.
ISSN 2075-4450 (Print), 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12111048)
alata
Seal, Susan
ORCID: 0000-0002-3952-1562
and Muller, Emanuelle
(2007)
Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis.
Archives of Virology, 152 (4).
pp. 819-825.
ISSN 0304-8608 (Print), 1432-8798 (Online)
(doi:https://doi.org/10.1007/s00705-006-0888-7)
alpha-glucosidase
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
aphids
Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan
ORCID: 0000-0002-3952-1562
, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Bailey, A and Foster, Gary
(2023)
Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants.
Frontiers in Sustainable Food Systems, 7:1027842.
pp. 1-9.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1027842)
aquaporin
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
Asia 1 mtCOI
Seal, Susan
ORCID: 0000-0002-3952-1562
, Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David
(2012)
Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade.
Journal of Integrative Agriculture, 11 (2).
pp. 281-292.
ISSN 2095-3119
(doi:https://doi.org/10.1016/S2095-3119(12)60012-4)
bacilliform virus
Seal, Susan
ORCID: 0000-0002-3952-1562
and Muller, Emanuelle
(2007)
Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis.
Archives of Virology, 152 (4).
pp. 819-825.
ISSN 0304-8608 (Print), 1432-8798 (Online)
(doi:https://doi.org/10.1007/s00705-006-0888-7)
Bacterial endosymbionts
Vyskočilová, Soňa
ORCID: 0000-0001-5296-4272
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
ORCID: 0000-0001-6413-580X
(2019)
Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications.
Journal of Pest Science, 92 (3).
pp. 1071-1088.
ISSN 1612-4758 (Print), 1612-4766 (Online)
(doi:https://doi.org/10.1007/s10340-019-01113-9)
Badna-PCR
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
Badnavirus
Seal, Susan
ORCID: 0000-0002-3952-1562
, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line
(2014)
The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes.
Virus Research, 186.
pp. 144-154.
ISSN 0168-1702 (Print), 1872-7492 (Online)
(doi:https://doi.org/10.1016/j.virusres.2014.01.007)
Bemisia tabaci
Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda
ORCID: 0000-0002-8060-866X
, Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan
ORCID: 0000-0002-3952-1562
, Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S
(2024)
A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group.
Insect Science.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.13361)
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
Namuddu, Annet, Seal, Susan
ORCID: 0000-0002-3952-1562
, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John
(2023)
Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas.
Frontiers in Sustainable Food Systems, 7:106810.
pp. 1-15.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1068109)
Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
and Seal, Susan
ORCID: 0000-0002-3952-1562
(2022)
Characterization of transposable elements within the Bemisia tabaci species complex.
Mobile DNA, 13 (12).
ISSN 1759-8753 (Online)
(doi:https://doi.org/10.1186/s13100-022-00270-6)
Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan
ORCID: 0000-0002-3952-1562
and Luan, Jun-Bo
(2021)
Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts.
PLoS Pathogens, 17 (11):e1010120.
ISSN 1553-7366 (Print), 1553-7374 (Online)
(doi:https://doi.org/10.1371/journal.ppat.1010120)
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
(2020)
Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies.
Insect Science, 28 (6).
pp. 1553-1566.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.12881)
Malka, Osnat
ORCID: 0000-0003-0193-377X
, Feldmesser, Ester, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Santos‐Garcia, Diego
ORCID: 0000-0002-3401-2662
, Han, Wen‐Hao, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John
ORCID: 0000-0001-6413-580X
and Morin, Shai
ORCID: 0000-0003-2157-1999
(2020)
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex.
Evolutionary Applications, 14 (3).
pp. 807-820.
ISSN 1752-4563 (Print), 1752-4571 (Online)
(doi:https://doi.org/10.1111/eva.13162)
Chi, Yao, Pan, Li-Long, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan
ORCID: 0000-0002-3952-1562
and Wang, Xiao-Wei
(2019)
Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex.
Virology, 15.
pp. 141-149.
ISSN 0042-6822
(doi:https://doi.org/10.1016/j.virol.2019.11.013)
Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John and Morin, Shai
(2018)
Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses.
Molecular Ecology, 27 (21).
pp. 4241-4256.
ISSN 0962-1083 (Print), 1365-294X (Online)
(doi:https://doi.org/10.1111/mec.14865)
Vyskočilová, Soňa, Tay, Wee Tek, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
(2018)
An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex.
Scientific Reports, 8:10886.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-018-29305-w)
Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter
(2018)
Review and guide to a future naming system of African Bemisia tabaci species.
Systematic Entomology, 43 (3).
pp. 427-433.
ISSN 0307-6970 (Print), 1365-3113 (Online)
(doi:https://doi.org/10.1111/syen.12294)
Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan
ORCID: 0000-0002-3952-1562
(2014)
Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR.
Journal of Insect Science, 14 (1):63.
pp. 1-25.
ISSN 1536-2442
(doi:https://doi.org/10.1673/031.014.63)
Seal, Susan
ORCID: 0000-0002-3952-1562
, Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David
(2012)
Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade.
Journal of Integrative Agriculture, 11 (2).
pp. 281-292.
ISSN 2095-3119
(doi:https://doi.org/10.1016/S2095-3119(12)60012-4)
Seal, Susan
ORCID: 0000-0002-3952-1562
, Jeger, M.J. and vandenBosch, F.
(2006)
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control.
Critical Reviews in Plant Sciences, 25 (1).
pp. 23-46.
ISSN 0735-2689
(doi:https://doi.org/10.1080/07352680500365257)
Bemisia tabaci whitefly species
Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Wang, Hua-Ling, Patel, Mitulkumar V., Kabaalu, Richard, Omongo, Christopher A., Alicai, Titus, Tairo, Fred, Ndunguru, Joseph, Sseruwagi, Peter and Colvin, John
(2018)
African ancestry of New World, Bemisia tabaci-whitefly species.
Scientific Reports, 8 (1):2734.
ISSN 2045-2322 (Print), 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-018-20956-3)
bioinformatics
Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
and Seal, Susan
ORCID: 0000-0002-3952-1562
(2022)
Characterization of transposable elements within the Bemisia tabaci species complex.
Mobile DNA, 13 (12).
ISSN 1759-8753 (Online)
(doi:https://doi.org/10.1186/s13100-022-00270-6)
biological species
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
biological traits
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Sseruwagi, Peter, Colvin, John and Seal, Susan
ORCID: 0000-0002-3952-1562
(2021)
Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species?
Insects, 12 (3):260.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12030260)
biosafety
Black, Robert
ORCID: 0000-0001-6596-882X
, Fava, Fabio, Mattei, Niccolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Verdier, Valerie
(2011)
Case studies on the use of biotechnologies and on biosafety provisions in four African countries.
Journal of Biotechnology, 156 (4).
pp. 370-381.
ISSN 0168-1656
(doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)
biotechnology
Black, Robert
ORCID: 0000-0001-6596-882X
, Fava, Fabio, Mattei, Niccolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Verdier, Valerie
(2011)
Case studies on the use of biotechnologies and on biosafety provisions in four African countries.
Journal of Biotechnology, 156 (4).
pp. 370-381.
ISSN 0168-1656
(doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)
Busco
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
canna
Monger, W.A., Harju, V., Skelton, A., Seal, Susan
ORCID: 0000-0002-3952-1562
and Mumford, R.A.
(2007)
Brief Report: Canna yellow streak virus: a new potyvirus associated with severe streaking symptoms in canna.
Archives of Virology, 152 (8).
pp. 1527-1530.
ISSN 0304-8608
(doi:https://doi.org/10.1007/s00705-007-0977-2)
Capacity building
Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Chikoti, Patrick C., Seal, Susan
ORCID: 0000-0002-3952-1562
and Silva, Gonҫalo
ORCID: 0000-0001-5544-2947
(2020)
A quick and sensitive diagnostic tool for detection of Maize streak virus.
Scientific Reports, 10:19633.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-020-76612-2)
cassava
Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan
ORCID: 0000-0002-3952-1562
, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Bailey, A and Foster, Gary
(2023)
Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants.
Frontiers in Sustainable Food Systems, 7:1027842.
pp. 1-9.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1027842)
cassava brown streak disease
Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan
ORCID: 0000-0002-3952-1562
, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Bailey, A and Foster, Gary
(2023)
Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants.
Frontiers in Sustainable Food Systems, 7:1027842.
pp. 1-9.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1027842)
cassava brown streak ipomoviruses
Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan
ORCID: 0000-0002-3952-1562
, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Bailey, A and Foster, Gary
(2023)
Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants.
Frontiers in Sustainable Food Systems, 7:1027842.
pp. 1-9.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1027842)
cassava brown streak viruses
Munguti, Florence M., Kilalo, Dora C., Yegon, Hillary K., Macharia, Isaac, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mwango’mbe, Agnes W., Nyaboga, Evans N. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2024)
Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses.
Scientific Reports, 14:12438.
pp. 1-11.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-024-62249-y)
Cassava mosaic disease
Chi, Yao, Pan, Li-Long, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan
ORCID: 0000-0002-3952-1562
and Wang, Xiao-Wei
(2019)
Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex.
Virology, 15.
pp. 141-149.
ISSN 0042-6822
(doi:https://doi.org/10.1016/j.virol.2019.11.013)
cassava mosaic-virus
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
cladogenesis
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
common bean
Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert
ORCID: 0000-0002-7437-1934
, Wagner, Thomas, Seal, Susan
ORCID: 0000-0002-3952-1562
, Kriticos, Darren J. and Otim, Michael H.
(2021)
Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda.
Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048.
pp. 1-12.
ISSN 2075-4450 (Print), 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12111048)
comparative genomics
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
constitutive and plastic expression
Malka, Osnat
ORCID: 0000-0003-0193-377X
, Feldmesser, Ester, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Santos‐Garcia, Diego
ORCID: 0000-0002-3401-2662
, Han, Wen‐Hao, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John
ORCID: 0000-0001-6413-580X
and Morin, Shai
ORCID: 0000-0003-2157-1999
(2020)
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex.
Evolutionary Applications, 14 (3).
pp. 807-820.
ISSN 1752-4563 (Print), 1752-4571 (Online)
(doi:https://doi.org/10.1111/eva.13162)
control
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
crop biotechnology
Seal, Susan
ORCID: 0000-0002-3952-1562
, Sangare, A. and Makinde, M.
(2008)
Crop biotechnology and biosafety.
SCARDA Briefing Papers Strengthening Capacity for Agricultural Research and Development in Africa.
Forum for Agricultural Research in Africa, Accra, pp. 24-32.
ISBN 978-9988-1-1063-4
crop yields
Seal, Susan
ORCID: 0000-0002-3952-1562
, Sangare, A. and Makinde, M.
(2008)
Crop biotechnology and biosafety.
SCARDA Briefing Papers Strengthening Capacity for Agricultural Research and Development in Africa.
Forum for Agricultural Research in Africa, Accra, pp. 24-32.
ISBN 978-9988-1-1063-4
cryptic species
Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda
ORCID: 0000-0002-8060-866X
, Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan
ORCID: 0000-0002-3952-1562
, Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S
(2024)
A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group.
Insect Science.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.13361)
damage
Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert
ORCID: 0000-0002-7437-1934
, Wagner, Thomas, Seal, Susan
ORCID: 0000-0002-3952-1562
, Kriticos, Darren J. and Otim, Michael H.
(2021)
Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda.
Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048.
pp. 1-12.
ISSN 2075-4450 (Print), 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12111048)
detoxification
Seal, Susan
ORCID: 0000-0002-3952-1562
, Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai
(2020)
Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex.
Genome Biology and Evolution, 12 (2).
pp. 3857-3872.
ISSN 1759-6653 (Online)
(doi:https://doi.org/10.1093/gbe/evaa002)
diagnostic
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
diagnostics
Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Chikoti, Patrick C., Seal, Susan
ORCID: 0000-0002-3952-1562
and Silva, Gonҫalo
ORCID: 0000-0001-5544-2947
(2020)
A quick and sensitive diagnostic tool for detection of Maize streak virus.
Scientific Reports, 10:19633.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-020-76612-2)
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
Diet breadth
Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John and Morin, Shai
(2018)
Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses.
Molecular Ecology, 27 (21).
pp. 4241-4256.
ISSN 0962-1083 (Print), 1365-294X (Online)
(doi:https://doi.org/10.1111/mec.14865)
Differential transmission
Chi, Yao, Pan, Li-Long, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan
ORCID: 0000-0002-3952-1562
and Wang, Xiao-Wei
(2019)
Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex.
Virology, 15.
pp. 141-149.
ISSN 0042-6822
(doi:https://doi.org/10.1016/j.virol.2019.11.013)
Dioscorea spp.
Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Kumar, Lava P.
(2020)
Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria.
Current Plant Biology, 23:100156.
ISSN 2214-6628 (Online)
(doi:https://doi.org/10.1016/j.cpb.2020.100156)
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
Dioscorea yam
Seal, Susan
ORCID: 0000-0002-3952-1562
, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line
(2014)
The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes.
Virus Research, 186.
pp. 144-154.
ISSN 0168-1702 (Print), 1872-7492 (Online)
(doi:https://doi.org/10.1016/j.virusres.2014.01.007)
disease
Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan
ORCID: 0000-0002-3952-1562
, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Bailey, A and Foster, Gary
(2023)
Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants.
Frontiers in Sustainable Food Systems, 7:1027842.
pp. 1-9.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1027842)
Diversification
Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John and Morin, Shai
(2018)
Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses.
Molecular Ecology, 27 (21).
pp. 4241-4256.
ISSN 0962-1083 (Print), 1365-294X (Online)
(doi:https://doi.org/10.1111/mec.14865)
diversity
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
dna
Seal, Susan
ORCID: 0000-0002-3952-1562
and Muller, Emanuelle
(2007)
Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis.
Archives of Virology, 152 (4).
pp. 819-825.
ISSN 0304-8608 (Print), 1432-8798 (Online)
(doi:https://doi.org/10.1007/s00705-006-0888-7)
DNA extraction
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
DNA satellite molecules
Seal, Susan
ORCID: 0000-0002-3952-1562
, Jeger, M.J. and vandenBosch, F.
(2006)
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control.
Critical Reviews in Plant Sciences, 25 (1).
pp. 23-46.
ISSN 0735-2689
(doi:https://doi.org/10.1080/07352680500365257)
DNA transposons
Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
and Seal, Susan
ORCID: 0000-0002-3952-1562
(2022)
Characterization of transposable elements within the Bemisia tabaci species complex.
Mobile DNA, 13 (12).
ISSN 1759-8753 (Online)
(doi:https://doi.org/10.1186/s13100-022-00270-6)
early virus detection
Munguti, Florence M., Kilalo, Dora C., Yegon, Hillary K., Macharia, Isaac, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mwango’mbe, Agnes W., Nyaboga, Evans N. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2024)
Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses.
Scientific Reports, 14:12438.
pp. 1-11.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-024-62249-y)
ELISA
Seal, Susan
ORCID: 0000-0002-3952-1562
, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line
(2014)
The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes.
Virus Research, 186.
pp. 144-154.
ISSN 0168-1702 (Print), 1872-7492 (Online)
(doi:https://doi.org/10.1016/j.virusres.2014.01.007)
emerging disease epidemics
Seal, Susan
ORCID: 0000-0002-3952-1562
, Jeger, M.J. and vandenBosch, F.
(2006)
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control.
Critical Reviews in Plant Sciences, 25 (1).
pp. 23-46.
ISSN 0735-2689
(doi:https://doi.org/10.1080/07352680500365257)
Endogenous pararetrovirus
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
Endogenous pararetroviruses
Seal, Susan
ORCID: 0000-0002-3952-1562
, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line
(2014)
The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes.
Virus Research, 186.
pp. 144-154.
ISSN 0168-1702 (Print), 1872-7492 (Online)
(doi:https://doi.org/10.1016/j.virusres.2014.01.007)
endosymbiont
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
epidemiology
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
Episomal badnavirus
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
expression
Seal, Susan
ORCID: 0000-0002-3952-1562
and Muller, Emanuelle
(2007)
Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis.
Archives of Virology, 152 (4).
pp. 819-825.
ISSN 0304-8608 (Print), 1432-8798 (Online)
(doi:https://doi.org/10.1007/s00705-006-0888-7)
Fastqc
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
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Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
five families: Caulimoviridae
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
food security
Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan
ORCID: 0000-0002-3952-1562
, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Bailey, A and Foster, Gary
(2023)
Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants.
Frontiers in Sustainable Food Systems, 7:1027842.
pp. 1-9.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1027842)
Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Chikoti, Patrick C., Seal, Susan
ORCID: 0000-0002-3952-1562
and Silva, Gonҫalo
ORCID: 0000-0001-5544-2947
(2020)
A quick and sensitive diagnostic tool for detection of Maize streak virus.
Scientific Reports, 10:19633.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-020-76612-2)
geminiviruses
Seal, Susan
ORCID: 0000-0002-3952-1562
, Jeger, M.J. and vandenBosch, F.
(2006)
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control.
Critical Reviews in Plant Sciences, 25 (1).
pp. 23-46.
ISSN 0735-2689
(doi:https://doi.org/10.1080/07352680500365257)
gene expression
Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan
ORCID: 0000-0002-3952-1562
(2014)
Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR.
Journal of Insect Science, 14 (1):63.
pp. 1-25.
ISSN 1536-2442
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gene flow
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
gene silencing
Seal, Susan
ORCID: 0000-0002-3952-1562
, Jeger, M.J. and vandenBosch, F.
(2006)
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control.
Critical Reviews in Plant Sciences, 25 (1).
pp. 23-46.
ISSN 0735-2689
(doi:https://doi.org/10.1080/07352680500365257)
gene targets
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
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genetic differentiation
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
genetic variation
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
genome assembly
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
Ghana
Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Kumar, Lava P.
(2020)
Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria.
Current Plant Biology, 23:100156.
ISSN 2214-6628 (Online)
(doi:https://doi.org/10.1016/j.cpb.2020.100156)
glutathione S-transferase
Seal, Susan
ORCID: 0000-0002-3952-1562
, Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai
(2020)
Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex.
Genome Biology and Evolution, 12 (2).
pp. 3857-3872.
ISSN 1759-6653 (Online)
(doi:https://doi.org/10.1093/gbe/evaa002)
haplotype
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
Hepadnaviridae
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
horizontal genes
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
horizontally acquired genes
Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan
ORCID: 0000-0002-3952-1562
and Luan, Jun-Bo
(2021)
Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts.
PLoS Pathogens, 17 (11):e1010120.
ISSN 1553-7366 (Print), 1553-7374 (Online)
(doi:https://doi.org/10.1371/journal.ppat.1010120)
host adaptation
Malka, Osnat
ORCID: 0000-0003-0193-377X
, Feldmesser, Ester, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Santos‐Garcia, Diego
ORCID: 0000-0002-3401-2662
, Han, Wen‐Hao, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John
ORCID: 0000-0001-6413-580X
and Morin, Shai
ORCID: 0000-0003-2157-1999
(2020)
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex.
Evolutionary Applications, 14 (3).
pp. 807-820.
ISSN 1752-4563 (Print), 1752-4571 (Online)
(doi:https://doi.org/10.1111/eva.13162)
Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John and Morin, Shai
(2018)
Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses.
Molecular Ecology, 27 (21).
pp. 4241-4256.
ISSN 0962-1083 (Print), 1365-294X (Online)
(doi:https://doi.org/10.1111/mec.14865)
host-plants
Namuddu, Annet, Seal, Susan
ORCID: 0000-0002-3952-1562
, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John
(2023)
Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas.
Frontiers in Sustainable Food Systems, 7:106810.
pp. 1-15.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1068109)
ICTV report and caulimoviridae
Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
, Stavolone, Livia and Umber, Marie
(2020)
ICTV virus taxonomy profile: caulimoviridae.
Journal of General Virology, 101 (10).
pp. 1025-1026.
ISSN 0022-1317 (Print), 1465-2099 (Online)
(doi:https://doi.org/10.1099/jgv.0.001497)
Illumina adapters
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
Immunosorbent electron microscopy
Seal, Susan
ORCID: 0000-0002-3952-1562
, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line
(2014)
The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes.
Virus Research, 186.
pp. 144-154.
ISSN 0168-1702 (Print), 1872-7492 (Online)
(doi:https://doi.org/10.1016/j.virusres.2014.01.007)
impact
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
Insect‐plant interactions
Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John and Morin, Shai
(2018)
Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses.
Molecular Ecology, 27 (21).
pp. 4241-4256.
ISSN 0962-1083 (Print), 1365-294X (Online)
(doi:https://doi.org/10.1111/mec.14865)
insect–plant interactions
Malka, Osnat
ORCID: 0000-0003-0193-377X
, Feldmesser, Ester, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Santos‐Garcia, Diego
ORCID: 0000-0002-3401-2662
, Han, Wen‐Hao, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John
ORCID: 0000-0001-6413-580X
and Morin, Shai
ORCID: 0000-0003-2157-1999
(2020)
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex.
Evolutionary Applications, 14 (3).
pp. 807-820.
ISSN 1752-4563 (Print), 1752-4571 (Online)
(doi:https://doi.org/10.1111/eva.13162)
Invasiveness
Vyskočilová, Soňa
ORCID: 0000-0001-5296-4272
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
ORCID: 0000-0001-6413-580X
(2019)
Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications.
Journal of Pest Science, 92 (3).
pp. 1071-1088.
ISSN 1612-4758 (Print), 1612-4766 (Online)
(doi:https://doi.org/10.1007/s10340-019-01113-9)
isothermal amplification
Munguti, Florence M., Kilalo, Dora C., Yegon, Hillary K., Macharia, Isaac, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mwango’mbe, Agnes W., Nyaboga, Evans N. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2024)
Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses.
Scientific Reports, 14:12438.
pp. 1-11.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-024-62249-y)
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2023)
Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Kumar, Lava P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rapid detection of potyviruses from crude plant extracts.
Analytical Biochemistry, 546.
pp. 17-22.
ISSN 0003-2697 (Print), 1096-0309 (Online)
(doi:https://doi.org/10.1016/j.ab.2018.01.019)
LAMP
Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Chikoti, Patrick C., Seal, Susan
ORCID: 0000-0002-3952-1562
and Silva, Gonҫalo
ORCID: 0000-0001-5544-2947
(2020)
A quick and sensitive diagnostic tool for detection of Maize streak virus.
Scientific Reports, 10:19633.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-020-76612-2)
leaf beetle
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
leaf curl virus
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
life-history traits
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
liquid-chromatography
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
lysine
Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan
ORCID: 0000-0002-3952-1562
and Luan, Jun-Bo
(2021)
Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts.
PLoS Pathogens, 17 (11):e1010120.
ISSN 1553-7366 (Print), 1553-7374 (Online)
(doi:https://doi.org/10.1371/journal.ppat.1010120)
Maize streak virus
Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Chikoti, Patrick C., Seal, Susan
ORCID: 0000-0002-3952-1562
and Silva, Gonҫalo
ORCID: 0000-0001-5544-2947
(2020)
A quick and sensitive diagnostic tool for detection of Maize streak virus.
Scientific Reports, 10:19633.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-020-76612-2)
management implications
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Sseruwagi, Peter, Colvin, John and Seal, Susan
ORCID: 0000-0002-3952-1562
(2021)
Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species?
Insects, 12 (3):260.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12030260)
Metaviridae
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
microsatellites
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
mitochondrial DNA
Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Hilary Otim, Michael
(2022)
Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda.
Insects, 13 (6):543.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects13060543)
Mitochondrial phylogenetic groups
Vyskočilová, Soňa
ORCID: 0000-0001-5296-4272
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
ORCID: 0000-0001-6413-580X
(2019)
Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications.
Journal of Pest Science, 92 (3).
pp. 1071-1088.
ISSN 1612-4758 (Print), 1612-4766 (Online)
(doi:https://doi.org/10.1007/s10340-019-01113-9)
model law
Black, Robert
ORCID: 0000-0001-6596-882X
, Fava, Fabio, Mattei, Niccolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Verdier, Valerie
(2011)
Case studies on the use of biotechnologies and on biosafety provisions in four African countries.
Journal of Biotechnology, 156 (4).
pp. 370-381.
ISSN 0168-1656
(doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)
molecular evolution
Seal, Susan
ORCID: 0000-0002-3952-1562
, Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai
(2020)
Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex.
Genome Biology and Evolution, 12 (2).
pp. 3857-3872.
ISSN 1759-6653 (Online)
(doi:https://doi.org/10.1093/gbe/evaa002)
molecular mechanisms
Malka, Osnat
ORCID: 0000-0003-0193-377X
, Feldmesser, Ester, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Santos‐Garcia, Diego
ORCID: 0000-0002-3401-2662
, Han, Wen‐Hao, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John
ORCID: 0000-0001-6413-580X
and Morin, Shai
ORCID: 0000-0003-2157-1999
(2020)
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex.
Evolutionary Applications, 14 (3).
pp. 807-820.
ISSN 1752-4563 (Print), 1752-4571 (Online)
(doi:https://doi.org/10.1111/eva.13162)
MSV
Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Chikoti, Patrick C., Seal, Susan
ORCID: 0000-0002-3952-1562
and Silva, Gonҫalo
ORCID: 0000-0001-5544-2947
(2020)
A quick and sensitive diagnostic tool for detection of Maize streak virus.
Scientific Reports, 10:19633.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-020-76612-2)
myzus-persicae homoptera
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
next generation sequencing
Seal, Susan
ORCID: 0000-0002-3952-1562
, Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David
(2012)
Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade.
Journal of Integrative Agriculture, 11 (2).
pp. 281-292.
ISSN 2095-3119
(doi:https://doi.org/10.1016/S2095-3119(12)60012-4)
Nigeria
Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Kumar, Lava P.
(2020)
Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria.
Current Plant Biology, 23:100156.
ISSN 2214-6628 (Online)
(doi:https://doi.org/10.1016/j.cpb.2020.100156)
Ootheca spp.
Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert
ORCID: 0000-0002-7437-1934
, Wagner, Thomas, Seal, Susan
ORCID: 0000-0002-3952-1562
, Kriticos, Darren J. and Otim, Michael H.
(2021)
Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda.
Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048.
pp. 1-12.
ISSN 2075-4450 (Print), 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12111048)
Optimal foraging theory
Vyskočilová, Soňa
ORCID: 0000-0001-5296-4272
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
ORCID: 0000-0001-6413-580X
(2019)
Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications.
Journal of Pest Science, 92 (3).
pp. 1071-1088.
ISSN 1612-4758 (Print), 1612-4766 (Online)
(doi:https://doi.org/10.1007/s10340-019-01113-9)
Optimal oviposition theory
Vyskočilová, Soňa
ORCID: 0000-0001-5296-4272
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
ORCID: 0000-0001-6413-580X
(2019)
Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications.
Journal of Pest Science, 92 (3).
pp. 1071-1088.
ISSN 1612-4758 (Print), 1612-4766 (Online)
(doi:https://doi.org/10.1007/s10340-019-01113-9)
osmoregulation
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
PCR
Seal, Susan
ORCID: 0000-0002-3952-1562
, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line
(2014)
The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes.
Virus Research, 186.
pp. 144-154.
ISSN 0168-1702 (Print), 1872-7492 (Online)
(doi:https://doi.org/10.1016/j.virusres.2014.01.007)
performance
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
pest
Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter
(2018)
Review and guide to a future naming system of African Bemisia tabaci species.
Systematic Entomology, 43 (3).
pp. 427-433.
ISSN 0307-6970 (Print), 1365-3113 (Online)
(doi:https://doi.org/10.1111/syen.12294)
pest management
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
phylogenetics
Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda
ORCID: 0000-0002-8060-866X
, Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan
ORCID: 0000-0002-3952-1562
, Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S
(2024)
A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group.
Insect Science.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.13361)
phylogenomics
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
(2020)
Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies.
Insect Science, 28 (6).
pp. 1553-1566.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.12881)
plant damage
Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter
(2018)
Review and guide to a future naming system of African Bemisia tabaci species.
Systematic Entomology, 43 (3).
pp. 427-433.
ISSN 0307-6970 (Print), 1365-3113 (Online)
(doi:https://doi.org/10.1111/syen.12294)
policy
Black, Robert
ORCID: 0000-0001-6596-882X
, Fava, Fabio, Mattei, Niccolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Verdier, Valerie
(2011)
Case studies on the use of biotechnologies and on biosafety provisions in four African countries.
Journal of Biotechnology, 156 (4).
pp. 370-381.
ISSN 0168-1656
(doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)
polyphagy
Malka, Osnat
ORCID: 0000-0003-0193-377X
, Feldmesser, Ester, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Santos‐Garcia, Diego
ORCID: 0000-0002-3401-2662
, Han, Wen‐Hao, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John
ORCID: 0000-0001-6413-580X
and Morin, Shai
ORCID: 0000-0003-2157-1999
(2020)
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex.
Evolutionary Applications, 14 (3).
pp. 807-820.
ISSN 1752-4563 (Print), 1752-4571 (Online)
(doi:https://doi.org/10.1111/eva.13162)
Portiera
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
positive selection
Seal, Susan
ORCID: 0000-0002-3952-1562
, Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai
(2020)
Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex.
Genome Biology and Evolution, 12 (2).
pp. 3857-3872.
ISSN 1759-6653 (Online)
(doi:https://doi.org/10.1093/gbe/evaa002)
Potyvirus
Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Kumar, Lava P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rapid detection of potyviruses from crude plant extracts.
Analytical Biochemistry, 546.
pp. 17-22.
ISSN 0003-2697 (Print), 1096-0309 (Online)
(doi:https://doi.org/10.1016/j.ab.2018.01.019)
Monger, W.A., Harju, V., Skelton, A., Seal, Susan
ORCID: 0000-0002-3952-1562
and Mumford, R.A.
(2007)
Brief Report: Canna yellow streak virus: a new potyvirus associated with severe streaking symptoms in canna.
Archives of Virology, 152 (8).
pp. 1527-1530.
ISSN 0304-8608
(doi:https://doi.org/10.1007/s00705-007-0977-2)
Pseudoviridae
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
quality control
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
quantitative real-time (QRT)-PCR
Seal, Susan
ORCID: 0000-0002-3952-1562
, Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David
(2012)
Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade.
Journal of Integrative Agriculture, 11 (2).
pp. 281-292.
ISSN 2095-3119
(doi:https://doi.org/10.1016/S2095-3119(12)60012-4)
Quast
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
RAD-Seq
Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda
ORCID: 0000-0002-8060-866X
, Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan
ORCID: 0000-0002-3952-1562
, Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S
(2024)
A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group.
Insect Science.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.13361)
rapid diagnosis
Munguti, Florence M., Kilalo, Dora C., Yegon, Hillary K., Macharia, Isaac, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mwango’mbe, Agnes W., Nyaboga, Evans N. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2024)
Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses.
Scientific Reports, 14:12438.
pp. 1-11.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-024-62249-y)
Rapid diagnostics
Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Kumar, Lava P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rapid detection of potyviruses from crude plant extracts.
Analytical Biochemistry, 546.
pp. 17-22.
ISSN 0003-2697 (Print), 1096-0309 (Online)
(doi:https://doi.org/10.1016/j.ab.2018.01.019)
reciprocal crossing
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
(2020)
Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies.
Insect Science, 28 (6).
pp. 1553-1566.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.12881)
Recombinase polymerase amplification
Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Kumar, Lava P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rapid detection of potyviruses from crude plant extracts.
Analytical Biochemistry, 546.
pp. 17-22.
ISSN 0003-2697 (Print), 1096-0309 (Online)
(doi:https://doi.org/10.1016/j.ab.2018.01.019)
recombination
Seal, Susan
ORCID: 0000-0002-3952-1562
, Jeger, M.J. and vandenBosch, F.
(2006)
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control.
Critical Reviews in Plant Sciences, 25 (1).
pp. 23-46.
ISSN 0735-2689
(doi:https://doi.org/10.1080/07352680500365257)
regulation
Black, Robert
ORCID: 0000-0001-6596-882X
, Fava, Fabio, Mattei, Niccolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Verdier, Valerie
(2011)
Case studies on the use of biotechnologies and on biosafety provisions in four African countries.
Journal of Biotechnology, 156 (4).
pp. 370-381.
ISSN 0168-1656
(doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)
reproductive compatibility
Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda
ORCID: 0000-0002-8060-866X
, Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan
ORCID: 0000-0002-3952-1562
, Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S
(2024)
A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group.
Insect Science.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.13361)
Retroviridae
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
Reverse transcriptase recombinase polymerase amplification (RT-RPA)
Munguti, Florence M., Kilalo, Dora C., Yegon, Hillary K., Macharia, Isaac, Seal, Susan
ORCID: 0000-0002-3952-1562
, Mwango’mbe, Agnes W., Nyaboga, Evans N. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2024)
Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses.
Scientific Reports, 14:12438.
pp. 1-11.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-024-62249-y)
Reverse-transcribing viruses
Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
, Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H.
(2018)
Ortervirales: A new viral order unifying five families of reverse-transcribing viruses.
Journal of Virology, 92 (12).
00515-00518.
ISSN 0022-538X (Print), 1098-5514 (Online)
(doi:https://doi.org/10.1128/JVI.00515-18)
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
rhopalosiphum-padi homoptera
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
RNA interference
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
Rolling circle amplification
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
RT-LAMP
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2023)
Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
RT-qPCR
Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan
ORCID: 0000-0002-3952-1562
(2014)
Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR.
Journal of Insect Science, 14 (1):63.
pp. 1-25.
ISSN 1536-2442
(doi:https://doi.org/10.1673/031.014.63)
sap-feeding insect
Seal, Susan
ORCID: 0000-0002-3952-1562
, Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai
(2020)
Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex.
Genome Biology and Evolution, 12 (2).
pp. 3857-3872.
ISSN 1759-6653 (Online)
(doi:https://doi.org/10.1093/gbe/evaa002)
seed systems
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2023)
Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
species complex
Seal, Susan
ORCID: 0000-0002-3952-1562
, Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai
(2020)
Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex.
Genome Biology and Evolution, 12 (2).
pp. 3857-3872.
ISSN 1759-6653 (Online)
(doi:https://doi.org/10.1093/gbe/evaa002)
Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan
ORCID: 0000-0002-3952-1562
, Colvin, John and Morin, Shai
(2018)
Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses.
Molecular Ecology, 27 (21).
pp. 4241-4256.
ISSN 0962-1083 (Print), 1365-294X (Online)
(doi:https://doi.org/10.1111/mec.14865)
spotted wilt virus
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
Sri Lankan cassava mosaic virus
Chi, Yao, Pan, Li-Long, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan
ORCID: 0000-0002-3952-1562
and Wang, Xiao-Wei
(2019)
Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex.
Virology, 15.
pp. 141-149.
ISSN 0042-6822
(doi:https://doi.org/10.1016/j.virol.2019.11.013)
SSA3
Namuddu, Annet, Seal, Susan
ORCID: 0000-0002-3952-1562
, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John
(2023)
Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas.
Frontiers in Sustainable Food Systems, 7:106810.
pp. 1-15.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1068109)
sub-Saharan Africa species
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
(2020)
Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies.
Insect Science, 28 (6).
pp. 1553-1566.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.12881)
sucrase
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
superabundance
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Sseruwagi, Peter, Colvin, John and Seal, Susan
ORCID: 0000-0002-3952-1562
(2021)
Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species?
Insects, 12 (3):260.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12030260)
Survival analysis
Vyskočilová, Soňa
ORCID: 0000-0001-5296-4272
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
ORCID: 0000-0001-6413-580X
(2019)
Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications.
Journal of Pest Science, 92 (3).
pp. 1071-1088.
ISSN 1612-4758 (Print), 1612-4766 (Online)
(doi:https://doi.org/10.1007/s10340-019-01113-9)
swollen shoot virus
Seal, Susan
ORCID: 0000-0002-3952-1562
and Muller, Emanuelle
(2007)
Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis.
Archives of Virology, 152 (4).
pp. 819-825.
ISSN 0304-8608 (Print), 1432-8798 (Online)
(doi:https://doi.org/10.1007/s00705-006-0888-7)
symbiosis
Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan
ORCID: 0000-0002-3952-1562
(2024)
In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease.
PeerJ – the Journal of Life and Environmental Sciences, 12:e16949.
pp. 1-27.
ISSN 2167-8359 (Online)
(doi:https://doi.org/10.7717/peerj.16949)
tabaci gennadius hemiptera
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
taxonomic changes
Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
and Stavolone, Livia
(2017)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses.
Technical Report.
International Committee on Taxonomy of Viruses (ICTV).
(doi:https://doi.org/10.13140/RG.2.2.24914.04804)
taxonomy
Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
, Stavolone, Livia and Umber, Marie
(2020)
ICTV virus taxonomy profile: caulimoviridae.
Journal of General Virology, 101 (10).
pp. 1025-1026.
ISSN 0022-1317 (Print), 1465-2099 (Online)
(doi:https://doi.org/10.1099/jgv.0.001497)
TE annotation
Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
and Seal, Susan
ORCID: 0000-0002-3952-1562
(2022)
Characterization of transposable elements within the Bemisia tabaci species complex.
Mobile DNA, 13 (12).
ISSN 1759-8753 (Online)
(doi:https://doi.org/10.1186/s13100-022-00270-6)
The International Committee on Taxonomy of Viruses (ICTV)
Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan
ORCID: 0000-0002-3952-1562
, Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H.
(2018)
Ortervirales: A new viral order unifying five families of reverse-transcribing viruses.
Journal of Virology, 92 (12).
00515-00518.
ISSN 0022-538X (Print), 1098-5514 (Online)
(doi:https://doi.org/10.1128/JVI.00515-18)
transcription profiling
Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan
ORCID: 0000-0002-3952-1562
(2014)
Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR.
Journal of Insect Science, 14 (1):63.
pp. 1-25.
ISSN 1536-2442
(doi:https://doi.org/10.1673/031.014.63)
transcriptome
Seal, Susan
ORCID: 0000-0002-3952-1562
, Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David
(2012)
Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade.
Journal of Integrative Agriculture, 11 (2).
pp. 281-292.
ISSN 2095-3119
(doi:https://doi.org/10.1016/S2095-3119(12)60012-4)
transcriptome assembly
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
transposable elements
Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
and Seal, Susan
ORCID: 0000-0002-3952-1562
(2022)
Characterization of transposable elements within the Bemisia tabaci species complex.
Mobile DNA, 13 (12).
ISSN 1759-8753 (Online)
(doi:https://doi.org/10.1186/s13100-022-00270-6)
transposons
Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Kaweesi, Tadeo, Seal, Susan
ORCID: 0000-0002-3952-1562
, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John
(2023)
Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
BMC Genomics, 24:408.
ISSN 1471-2164 (Online)
(doi:https://doi.org/10.1186/s12864-023-09474-3)
Trimmomatic
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
trinity
Sewe, Steven, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Sicat, Juan Paolo, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muhindira, Paul Visendi
(2022)
Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data.
In: Edwards, David, (ed.)
Plant Bioinformatics. Methods in Molecular Biology.
Springer Protocols, 2443
.
Humana Press - Springer Nature, New York, United States, pp. 211-232.
ISBN 978-1071620663 ; 978-1071620670
(doi:https://doi.org/10.1007/978-1-0716-2067-0_11)
Uganda
Namuddu, Annet, Seal, Susan
ORCID: 0000-0002-3952-1562
, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John
(2023)
Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas.
Frontiers in Sustainable Food Systems, 7:106810.
pp. 1-15.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1068109)
virus
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Kumar, Lava P.
(2020)
Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria.
Current Plant Biology, 23:100156.
ISSN 2214-6628 (Online)
(doi:https://doi.org/10.1016/j.cpb.2020.100156)
virus diagnostics
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2023)
Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
Virus transmission
Chi, Yao, Pan, Li-Long, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
, Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan
ORCID: 0000-0002-3952-1562
and Wang, Xiao-Wei
(2019)
Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex.
Virology, 15.
pp. 141-149.
ISSN 0042-6822
(doi:https://doi.org/10.1016/j.virol.2019.11.013)
West Africa
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2023)
Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
whiteflies
Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda
ORCID: 0000-0002-8060-866X
, Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan
ORCID: 0000-0002-3952-1562
, Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S
(2024)
A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group.
Insect Science.
ISSN 1672-9609 (Print), 1744-7917 (Online)
(doi:https://doi.org/10.1111/1744-7917.13361)
whitefly
Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie
ORCID: 0000-0002-0788-3243
and Seal, Susan
ORCID: 0000-0002-3952-1562
(2022)
Characterization of transposable elements within the Bemisia tabaci species complex.
Mobile DNA, 13 (12).
ISSN 1759-8753 (Online)
(doi:https://doi.org/10.1186/s13100-022-00270-6)
Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan
ORCID: 0000-0002-3952-1562
and Luan, Jun-Bo
(2021)
Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts.
PLoS Pathogens, 17 (11):e1010120.
ISSN 1553-7366 (Print), 1553-7374 (Online)
(doi:https://doi.org/10.1371/journal.ppat.1010120)
Mugerwa, Habibu
ORCID: 0000-0001-5077-0167
, Sseruwagi, Peter, Colvin, John and Seal, Susan
ORCID: 0000-0002-3952-1562
(2021)
Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species?
Insects, 12 (3):260.
ISSN 2075-4450 (Online)
(doi:https://doi.org/10.3390/insects12030260)
Seal, Susan
ORCID: 0000-0002-3952-1562
, Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David
(2012)
Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade.
Journal of Integrative Agriculture, 11 (2).
pp. 281-292.
ISSN 2095-3119
(doi:https://doi.org/10.1016/S2095-3119(12)60012-4)
Whitefly complex
Vyskočilová, Soňa, Tay, Wee Tek, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Colvin, John
(2018)
An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex.
Scientific Reports, 8:10886.
ISSN 2045-2322 (Online)
(doi:https://doi.org/10.1038/s41598-018-29305-w)
whitefly species
Namuddu, Annet, Seal, Susan
ORCID: 0000-0002-3952-1562
, van Brunschot, Sharon
ORCID: 0000-0002-9634-9463
, Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John
(2023)
Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas.
Frontiers in Sustainable Food Systems, 7:106810.
pp. 1-15.
ISSN 2571-581X (Online)
(doi:https://doi.org/10.3389/fsufs.2023.1068109)
whitefly-transmitted geminiviruses
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
(2006)
Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.)
Plant Virus Epidemiology.
Advances in Virus Research, 67
.
Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))
yam
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
(2023)
Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Guyader, Sébastien, Umber, Marie, Seal, Susan
ORCID: 0000-0002-3952-1562
and Teycheney, Pierre Yves
(2022)
Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management.
Viruses, 14 (9):1884.
pp. 1-23.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v14091884)
Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Seal, Susan
ORCID: 0000-0002-3952-1562
and Kumar, Lava P.
(2020)
Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria.
Current Plant Biology, 23:100156.
ISSN 2214-6628 (Online)
(doi:https://doi.org/10.1016/j.cpb.2020.100156)
Silva, Gonçalo
ORCID: 0000-0001-5544-2947
, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Kumar, Lava P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rapid detection of potyviruses from crude plant extracts.
Analytical Biochemistry, 546.
pp. 17-22.
ISSN 0003-2697 (Print), 1096-0309 (Online)
(doi:https://doi.org/10.1016/j.ab.2018.01.019)
Bömer, Moritz
ORCID: 0000-0003-1003-9622
, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo
ORCID: 0000-0001-5544-2947
, Lava Kumar, P. and Seal, Susan
ORCID: 0000-0002-3952-1562
(2018)
Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes.
Bio-protocol, 8 (1).
ISSN 2331-8325 (Online)
(doi:https://doi.org/10.21769/BioProtoc.2672)
Yam mosaic virus
Festus, Ruth, Seal, Susan
ORCID: 0000-0002-3952-1562
, Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo
ORCID: 0000-0001-5544-2947
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Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus.
Viruses, 15 (7):1592.
pp. 1-17.
ISSN 1999-4915 (Online)
(doi:https://doi.org/10.3390/v15071592)
yellow-dwarf-virus
Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C.
ORCID: 0000-0002-0736-3619
, Maruthi, M.N.
ORCID: 0000-0002-8060-866X
, Gibson, Gabriella, Seal, Susan
ORCID: 0000-0002-3952-1562
and Muniyappa, V.
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Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications.
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Advances in Virus Research, 67
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Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452.
ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10)
ISSN 0065-3527
(doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))