AB SOLiD

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Aegilops tauschii

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

arts based research

Saratsi, Eirini, Acott, Timothy, Allinson, Ewan, Edwards, David, Fremantle, Chris and Fish, Robert (2019) Valuing Arts and Arts Research. Discussion Paper. Valuing Nature Paper VNP22.

autoSNP

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

BAC

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Bioinformatics

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Black Gram Husk

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

BNG map

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Busco

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Centromere

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Cereals

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

chickpea

Ruperao, Pradeep, Chan, Chon-Kit Kenneth, Azam, Sarwar, Karafiátová, Miroslava, Hayashi, Satomi, Čížková, Jana, Saxena, Rachit K., Šimková, Hana, Song, Chi, Vrána, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M., Millán, Teresa, Singh, Karam B., Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Doležel, Jaroslav, Varshney, Rajeev K. and Edwards, David (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12182)

Chromsosomes

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

cicer

Ruperao, Pradeep, Chan, Chon-Kit Kenneth, Azam, Sarwar, Karafiátová, Miroslava, Hayashi, Satomi, Čížková, Jana, Saxena, Rachit K., Šimková, Hana, Song, Chi, Vrána, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M., Millán, Teresa, Singh, Karam B., Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Doležel, Jaroslav, Varshney, Rajeev K. and Edwards, David (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12182)

Conversion Processes

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

cytogenetics

Ruperao, Pradeep, Chan, Chon-Kit Kenneth, Azam, Sarwar, Karafiátová, Miroslava, Hayashi, Satomi, Čížková, Jana, Saxena, Rachit K., Šimková, Hana, Song, Chi, Vrána, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M., Millán, Teresa, Singh, Karam B., Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Doležel, Jaroslav, Varshney, Rajeev K. and Edwards, David (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12182)

database

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

diversity

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Lai, Kaitao, Lorenc, Michał T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon-Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline and Edwards, David (2015) Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal, 13 (1). pp. 97-104. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12240)

Double Haploid

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

evolution

Lai, Kaitao, Lorenc, Michał T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon-Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline and Edwards, David (2015) Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal, 13 (1). pp. 97-104. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12240)

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12044)

F2 Individual

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Fastqc

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Flow sorting

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Gene content variation

Golicz, Agnieszka A., Martinez, Paula A., Zander, Manuel, Patel, Dhwani A., Van De Wouw, Angela P., Visendi, Paul, Fitzgerald, Timothy L., Edwards, David and Batley, Jacqueline (2014) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics, 15 (2). pp. 189-196. ISSN 1438-793X (Print), 1438-7948 (Online) (doi:https://doi.org/10.1007/s10142-014-0412-1)

Gene loss

Golicz, Agnieszka A., Martinez, Paula A., Zander, Manuel, Patel, Dhwani A., Van De Wouw, Angela P., Visendi, Paul, Fitzgerald, Timothy L., Edwards, David and Batley, Jacqueline (2014) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics, 15 (2). pp. 189-196. ISSN 1438-793X (Print), 1438-7948 (Online) (doi:https://doi.org/10.1007/s10142-014-0412-1)

genome

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

genome assembly

Ruperao, Pradeep, Chan, Chon-Kit Kenneth, Azam, Sarwar, Karafiátová, Miroslava, Hayashi, Satomi, Čížková, Jana, Saxena, Rachit K., Šimková, Hana, Song, Chi, Vrána, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M., Millán, Teresa, Singh, Karam B., Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Doležel, Jaroslav, Varshney, Rajeev K. and Edwards, David (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12182)

genome diversity

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Genome sequencing

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12044)

Genome-wide Recombination

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Genotyping by sequencing

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

haplotype

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Heterozygous SNPs

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Illumina

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Illumina adapters

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Ion Torrent

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Leptosphaeria maculans

Golicz, Agnieszka A., Martinez, Paula A., Zander, Manuel, Patel, Dhwani A., Van De Wouw, Angela P., Visendi, Paul, Fitzgerald, Timothy L., Edwards, David and Batley, Jacqueline (2014) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics, 15 (2). pp. 189-196. ISSN 1438-793X (Print), 1438-7948 (Online) (doi:https://doi.org/10.1007/s10142-014-0412-1)

Markers

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

Next-generation sequencing – SASSY – BAC – Assembly – 7DS – Triticum aestivum – Saccharum spp

Visendi, Paul, Berkman, Paul J., Hayashi, Satomi, Golicz, Agnieszka A., Bayer, Philipp E., Ruperao, Pradeep, Hurgobin, Bhavna, Montenegro, Juan, Chan, Chon-Kit Kenneth, Staňková, Helena, Batley, Jacqueline, Šimková, Hana, Doležel, Jaroslav and Edwards, David (2016) An efficient approach to BAC based assembly of complex genomes. Plant Methods, 12 (2). pp. 1-9. ISSN 1746-4811 (Print), 1746-4811 (Online) (doi:https://doi.org/10.1186/s13007-016-0107-9)

NGS

Golicz, Agnieszka A., Martinez, Paula A., Zander, Manuel, Patel, Dhwani A., Van De Wouw, Angela P., Visendi, Paul, Fitzgerald, Timothy L., Edwards, David and Batley, Jacqueline (2014) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics, 15 (2). pp. 189-196. ISSN 1438-793X (Print), 1438-7948 (Online) (doi:https://doi.org/10.1007/s10142-014-0412-1)

Optical mapping

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Oxford nanopore

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Pacific biosciences

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

pangenome

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Physical Map

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Polyploidy

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

quality control

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Quast

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Re-sequencing

Golicz, Agnieszka A., Martinez, Paula A., Zander, Manuel, Patel, Dhwani A., Van De Wouw, Angela P., Visendi, Paul, Fitzgerald, Timothy L., Edwards, David and Batley, Jacqueline (2014) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics, 15 (2). pp. 189-196. ISSN 1438-793X (Print), 1438-7948 (Online) (doi:https://doi.org/10.1007/s10142-014-0412-1)

Recombinant Inbred Line

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Recombination Bin

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Recombination Hotspot

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Recombination Map

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Reference Cultivar

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Reference Genome

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Reference Genome Sequence

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

Roche 454

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Sequencing

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

single nucleotide polymorphisms

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Lai, Kaitao, Lorenc, Michał T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon-Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline and Edwards, David (2015) Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal, 13 (1). pp. 97-104. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12240)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Supplementary Table

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:https://doi.org/10.1007/s00122-015-2488-y)

transcriptome assembly

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Trimmomatic

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

trinity

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Triticum aestivum

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Lai, Kaitao, Lorenc, Michał T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon-Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline and Edwards, David (2015) Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal, 13 (1). pp. 97-104. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12240)

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12044)

valuing nature

Saratsi, Eirini, Acott, Timothy, Allinson, Ewan, Edwards, David, Fremantle, Chris and Fish, Robert (2019) Valuing Arts and Arts Research. Discussion Paper. Valuing Nature Paper VNP22.

Wheat

Appels, Rudi, Eversole, Kellye, Feuillet, Catherine, Keller, Beat, Rogers, Jane, Stein, Nils, Pozniak, Curtis J., Stein, Nils, Choulet, Frédéric, Distelfeld, Assaf, Eversole, Kellye, Poland, Jesse, Rogers, Jane, Ronen, Gil, Sharpe, Andrew G., Pozniak, Curtis, Ronen, Gil, Stein, Nils, Barad, Omer, Baruch, Kobi, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Sharpe, Andrew G., Ben-Zvi, Gil, Josselin, Ambre-Aurore, Stein, Nils, Mascher, Martin, Himmelbach, Axel, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Rogers, Jane, Balfourier, François, Gutierrez-Gonzalez, Juan, Hayden, Matthew, Josselin, Ambre-Aurore, Koh, ChuShin, Muehlbauer, Gary, Pasam, Raj K., Paux, Etienne, Pozniak, Curtis J., Rigault, Philippe, Sharpe, Andrew G., Tibbits, Josquin, Tiwari, Vijay, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Josselin, Ambre-Aurore, Rogers, Jane, Spannagl, Manuel, Choulet, Frédéric, Lang, Daniel, Gundlach, Heidrun, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Ormanbekova, Danara, Paux, Etienne, Prade, Verena, Šimková, Hana, Wicker, Thomas, Choulet, Frédéric, Spannagl, Manuel, Swarbreck, David, Rimbert, Hélène, Felder, Marius, Guilhot, Nicolas, Gundlach, Heidrun, Haberer, Georg, Kaithakottil, Gemy, Keilwagen, Jens, Lang, Daniel, Leroy, Philippe, Lux, Thomas, Mayer, Klaus F. X., Twardziok, Sven, Venturini, Luca, Appels, Rudi, Rimbert, Hélène, Choulet, Frédéric, Juhász, Angéla, Keeble-Gagnère, Gabriel, Choulet, Frédéric, Spannagl, Manuel, Lang, Daniel, Abrouk, Michael, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Wicker, Thomas, Choulet, Frédéric, Wicker, Thomas, Gundlach, Heidrun, Lang, Daniel, Spannagl, Manuel, Lang, Daniel, Spannagl, Manuel, Appels, Rudi, Fischer, Iris, Uauy, Cristobal, Borrill, Philippa, Ramirez-Gonzalez, Ricardo H., Appels, Rudi, Arnaud, Dominique, Chalabi, Smahane, Chalhoub, Boulos, Choulet, Frédéric, Cory, Aron, Datla, Raju, Davey, Mark W., Hayden, Matthew, Jacobs, John, Lang, Daniel, Robinson, Stephen J., Spannagl, Manuel, Steuernagel, Burkhard, Tibbits, Josquin, Tiwari, Vijay, van Ex, Fred, Wulff, Brande B. H., Pozniak, Curtis J., Robinson, Stephen J., Sharpe, Andrew G., Cory, Aron, Benhamed, Moussa, Paux, Etienne, Bendahmane, Abdelhafid, Concia, Lorenzo, Latrasse, David, Rogers, Jane, Jacobs, John, Alaux, Michael, Appels, Rudi, Bartoš, Jan, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, Letellier, Thomas, Olsen, Odd-Arne, Šimková, Hana, Singh, Kuldeep, Valárik, Miroslav, van der Vossen, Edwin, Vautrin, Sonia, Weining, Song, Korol, Abraham, Frenkel, Zeev, Fahima, Tzion, Glikson, Vladimir, Raats, Dina, Rogers, Jane, Tiwari, Vijay, Gill, Bikram, Paux, Etienne, Poland, Jesse, Doležel, Jaroslav, Číhalíková, Jarmila, Šimková, Hana, Toegelová, Helena, Vrána, Jan, Sourdille, Pierre, Darrier, Benoit, Appels, Rudi, Spannagl, Manuel, Lang, Daniel, Fischer, Iris, Ormanbekova, Danara, Prade, Verena, Barabaschi, Delfina, Cattivelli, Luigi, Hernandez, Pilar, Galvez, Sergio, Budak, Hikmet, Steuernagel, Burkhard, Jones, Jonathan D. G., Witek, Kamil, Wulff, Brande B. H., Yu, Guotai, Small, Ian, Melonek, Joanna, Zhou, Ruonan, Juhász, Angéla, Belova, Tatiana, Appels, Rudi, Olsen, Odd-Arne, Kanyuka, Kostya, King, Robert, Nilsen, Kirby, Walkowiak, Sean, Pozniak, Curtis J., Cuthbert, Richard, Datla, Raju, Knox, Ron, Wiebe, Krysta, Xiang, Daoquan, Rohde, Antje, Golds, Timothy, Doležel, Jaroslav, Čížková, Jana, Tibbits, Josquin, Budak, Hikmet, Akpinar, Bala Ani, Biyiklioglu, Sezgi, Muehlbauer, Gary, Poland, Jesse, Gao, Liangliang, Gutierrez-Gonzalez, Juan, N’Daiye, Amidou, Doležel, Jaroslav, Šimková, Hana, Číhalíková, Jarmila, Kubaláková, Marie, Šafář, Jan, Vrána, Jan, Berges, Hélène, Bellec, Arnaud, Vautrin, Sonia, Alaux, Michael, Alfama, Françoise, Adam-Blondon, Anne-Françoise, Flores, Raphael, Guerche, Claire, Letellier, Thomas, Loaec, Mikaël, Quesneville, Hadi, Pozniak, Curtis J., Sharpe, Andrew G., Walkowiak, Sean, Budak, Hikmet, Condie, Janet, Ens, Jennifer, Koh, ChuShin, Maclachlan, Ron, Tan, Yifang, Wicker, Thomas, Choulet, Frédéric, Paux, Etienne, Alberti, Adriana, Aury, Jean-Marc, Balfourier, François, Barbe, Valérie, Couloux, Arnaud, Cruaud, Corinne, Labadie, Karine, Mangenot, Sophie, Wincker, Patrick, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Singh, Kuldeep, Chhuneja, Parveen, Gupta, Om Prakash, Jindal, Suruchi, Kaur, Parampreet, Malik, Palvi, Sharma, Priti, Yadav, Bharat, Singh, Nagendra K., Khurana, JitendraP., Chaudhary, Chanderkant, Khurana, Paramjit, Kumar, Vinod, Mahato, Ajay, Mathur, Saloni, Sevanthi, Amitha, Sharma, Naveen, Tomar, Ram Sewak, Rogers, Jane, Jacobs, John, Alaux, Michael, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, van der Vossen, Edwin, Vautrin, Sonia, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Bartoš, Jan, Holušová, Kateřina, Plíhal, Ondřej, Clark, Matthew D., Heavens, Darren, Kettleborough, George, Wright, Jon, Valárik, Miroslav, Abrouk, Michael, Balcárková, Barbora, Holušová, Kateřina, Hu, Yuqin, Luo, Mingcheng, Salina, Elena, Ravin, Nikolai, Skryabin, Konstantin, Beletsky, Alexey, Kadnikov, Vitaly, Mardanov, Andrey, Nesterov, Michail, Rakitin, Andrey, Sergeeva, Ekaterina, Handa, Hirokazu, Kanamori, Hiroyuki, Katagiri, Satoshi, Kobayashi, Fuminori, Nasuda, Shuhei, Tanaka, Tsuyoshi, Wu, Jianzhong, Appels, Rudi, Hayden, Matthew, Keeble-Gagnère, Gabriel, Rigault, Philippe, Tibbits, Josquin, Olsen, Odd-Arne, Belova, Tatiana, Cattonaro, Federica, Jiumeng, Min, Kugler, Karl, Mayer, Klaus F. X., Pfeifer, Matthias, Sandve, Simen, Xun, Xu, Zhan, Bujie, Šimková, Hana, Abrouk, Michael, Batley, Jacqueline, Bayer, Philipp E., Edwards, David, Hayashi, Satomi, Toegelová, Helena, Tulpová, Zuzana, Visendi, Paul, Weining, Song, Cui, Licao, Du, Xianghong, Feng, Kewei, Nie, Xiaojun, Tong, Wei, Wang, Le, Borrill, Philippa, Gundlach, Heidrun, Galvez, Sergio, Kaithakottil, Gemy, Lang, Daniel, Lux, Thomas, Mascher, Martin, Ormanbekova, Danara, Prade, Verena, Ramirez-Gonzalez, Ricardo H., Spannagl, Manuel, Stein, Nils, Uauy, Cristobal, Venturini, Luca, Stein, Nils, Appels, Rudi, Eversole, Kellye, Rogers, Jane, Borrill, Philippa, Cattivelli, Luigi, Choulet, Frédéric, Hernandez, Pilar, Kanyuka, Kostya, Lang, Daniel, Mascher, Martin, Nilsen, Kirby, Paux, Etienne, Pozniak, Curtis J., Ramirez-Gonzalez, Ricardo H., Šimková, Hana, Small, Ian, Spannagl, Manuel, Swarbreck, David and Uauy, Cristobal (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403):eaar7191. ISSN 0036-8075 (Print), 1095-9203 (Online) (doi:https://doi.org/10.1126/science.aar7191)

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

wheat genome sequence

Appels, Rudi, Eversole, Kellye, Feuillet, Catherine, Keller, Beat, Rogers, Jane, Stein, Nils, Pozniak, Curtis J., Stein, Nils, Choulet, Frédéric, Distelfeld, Assaf, Eversole, Kellye, Poland, Jesse, Rogers, Jane, Ronen, Gil, Sharpe, Andrew G., Pozniak, Curtis, Ronen, Gil, Stein, Nils, Barad, Omer, Baruch, Kobi, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Sharpe, Andrew G., Ben-Zvi, Gil, Josselin, Ambre-Aurore, Stein, Nils, Mascher, Martin, Himmelbach, Axel, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Rogers, Jane, Balfourier, François, Gutierrez-Gonzalez, Juan, Hayden, Matthew, Josselin, Ambre-Aurore, Koh, ChuShin, Muehlbauer, Gary, Pasam, Raj K., Paux, Etienne, Pozniak, Curtis J., Rigault, Philippe, Sharpe, Andrew G., Tibbits, Josquin, Tiwari, Vijay, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Josselin, Ambre-Aurore, Rogers, Jane, Spannagl, Manuel, Choulet, Frédéric, Lang, Daniel, Gundlach, Heidrun, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Ormanbekova, Danara, Paux, Etienne, Prade, Verena, Šimková, Hana, Wicker, Thomas, Choulet, Frédéric, Spannagl, Manuel, Swarbreck, David, Rimbert, Hélène, Felder, Marius, Guilhot, Nicolas, Gundlach, Heidrun, Haberer, Georg, Kaithakottil, Gemy, Keilwagen, Jens, Lang, Daniel, Leroy, Philippe, Lux, Thomas, Mayer, Klaus F. X., Twardziok, Sven, Venturini, Luca, Appels, Rudi, Rimbert, Hélène, Choulet, Frédéric, Juhász, Angéla, Keeble-Gagnère, Gabriel, Choulet, Frédéric, Spannagl, Manuel, Lang, Daniel, Abrouk, Michael, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Wicker, Thomas, Choulet, Frédéric, Wicker, Thomas, Gundlach, Heidrun, Lang, Daniel, Spannagl, Manuel, Lang, Daniel, Spannagl, Manuel, Appels, Rudi, Fischer, Iris, Uauy, Cristobal, Borrill, Philippa, Ramirez-Gonzalez, Ricardo H., Appels, Rudi, Arnaud, Dominique, Chalabi, Smahane, Chalhoub, Boulos, Choulet, Frédéric, Cory, Aron, Datla, Raju, Davey, Mark W., Hayden, Matthew, Jacobs, John, Lang, Daniel, Robinson, Stephen J., Spannagl, Manuel, Steuernagel, Burkhard, Tibbits, Josquin, Tiwari, Vijay, van Ex, Fred, Wulff, Brande B. H., Pozniak, Curtis J., Robinson, Stephen J., Sharpe, Andrew G., Cory, Aron, Benhamed, Moussa, Paux, Etienne, Bendahmane, Abdelhafid, Concia, Lorenzo, Latrasse, David, Rogers, Jane, Jacobs, John, Alaux, Michael, Appels, Rudi, Bartoš, Jan, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, Letellier, Thomas, Olsen, Odd-Arne, Šimková, Hana, Singh, Kuldeep, Valárik, Miroslav, van der Vossen, Edwin, Vautrin, Sonia, Weining, Song, Korol, Abraham, Frenkel, Zeev, Fahima, Tzion, Glikson, Vladimir, Raats, Dina, Rogers, Jane, Tiwari, Vijay, Gill, Bikram, Paux, Etienne, Poland, Jesse, Doležel, Jaroslav, Číhalíková, Jarmila, Šimková, Hana, Toegelová, Helena, Vrána, Jan, Sourdille, Pierre, Darrier, Benoit, Appels, Rudi, Spannagl, Manuel, Lang, Daniel, Fischer, Iris, Ormanbekova, Danara, Prade, Verena, Barabaschi, Delfina, Cattivelli, Luigi, Hernandez, Pilar, Galvez, Sergio, Budak, Hikmet, Steuernagel, Burkhard, Jones, Jonathan D. G., Witek, Kamil, Wulff, Brande B. H., Yu, Guotai, Small, Ian, Melonek, Joanna, Zhou, Ruonan, Juhász, Angéla, Belova, Tatiana, Appels, Rudi, Olsen, Odd-Arne, Kanyuka, Kostya, King, Robert, Nilsen, Kirby, Walkowiak, Sean, Pozniak, Curtis J., Cuthbert, Richard, Datla, Raju, Knox, Ron, Wiebe, Krysta, Xiang, Daoquan, Rohde, Antje, Golds, Timothy, Doležel, Jaroslav, Čížková, Jana, Tibbits, Josquin, Budak, Hikmet, Akpinar, Bala Ani, Biyiklioglu, Sezgi, Muehlbauer, Gary, Poland, Jesse, Gao, Liangliang, Gutierrez-Gonzalez, Juan, N’Daiye, Amidou, Doležel, Jaroslav, Šimková, Hana, Číhalíková, Jarmila, Kubaláková, Marie, Šafář, Jan, Vrána, Jan, Berges, Hélène, Bellec, Arnaud, Vautrin, Sonia, Alaux, Michael, Alfama, Françoise, Adam-Blondon, Anne-Françoise, Flores, Raphael, Guerche, Claire, Letellier, Thomas, Loaec, Mikaël, Quesneville, Hadi, Pozniak, Curtis J., Sharpe, Andrew G., Walkowiak, Sean, Budak, Hikmet, Condie, Janet, Ens, Jennifer, Koh, ChuShin, Maclachlan, Ron, Tan, Yifang, Wicker, Thomas, Choulet, Frédéric, Paux, Etienne, Alberti, Adriana, Aury, Jean-Marc, Balfourier, François, Barbe, Valérie, Couloux, Arnaud, Cruaud, Corinne, Labadie, Karine, Mangenot, Sophie, Wincker, Patrick, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Singh, Kuldeep, Chhuneja, Parveen, Gupta, Om Prakash, Jindal, Suruchi, Kaur, Parampreet, Malik, Palvi, Sharma, Priti, Yadav, Bharat, Singh, Nagendra K., Khurana, JitendraP., Chaudhary, Chanderkant, Khurana, Paramjit, Kumar, Vinod, Mahato, Ajay, Mathur, Saloni, Sevanthi, Amitha, Sharma, Naveen, Tomar, Ram Sewak, Rogers, Jane, Jacobs, John, Alaux, Michael, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, van der Vossen, Edwin, Vautrin, Sonia, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Bartoš, Jan, Holušová, Kateřina, Plíhal, Ondřej, Clark, Matthew D., Heavens, Darren, Kettleborough, George, Wright, Jon, Valárik, Miroslav, Abrouk, Michael, Balcárková, Barbora, Holušová, Kateřina, Hu, Yuqin, Luo, Mingcheng, Salina, Elena, Ravin, Nikolai, Skryabin, Konstantin, Beletsky, Alexey, Kadnikov, Vitaly, Mardanov, Andrey, Nesterov, Michail, Rakitin, Andrey, Sergeeva, Ekaterina, Handa, Hirokazu, Kanamori, Hiroyuki, Katagiri, Satoshi, Kobayashi, Fuminori, Nasuda, Shuhei, Tanaka, Tsuyoshi, Wu, Jianzhong, Appels, Rudi, Hayden, Matthew, Keeble-Gagnère, Gabriel, Rigault, Philippe, Tibbits, Josquin, Olsen, Odd-Arne, Belova, Tatiana, Cattonaro, Federica, Jiumeng, Min, Kugler, Karl, Mayer, Klaus F. X., Pfeifer, Matthias, Sandve, Simen, Xun, Xu, Zhan, Bujie, Šimková, Hana, Abrouk, Michael, Batley, Jacqueline, Bayer, Philipp E., Edwards, David, Hayashi, Satomi, Toegelová, Helena, Tulpová, Zuzana, Visendi, Paul, Weining, Song, Cui, Licao, Du, Xianghong, Feng, Kewei, Nie, Xiaojun, Tong, Wei, Wang, Le, Borrill, Philippa, Gundlach, Heidrun, Galvez, Sergio, Kaithakottil, Gemy, Lang, Daniel, Lux, Thomas, Mascher, Martin, Ormanbekova, Danara, Prade, Verena, Ramirez-Gonzalez, Ricardo H., Spannagl, Manuel, Stein, Nils, Uauy, Cristobal, Venturini, Luca, Stein, Nils, Appels, Rudi, Eversole, Kellye, Rogers, Jane, Borrill, Philippa, Cattivelli, Luigi, Choulet, Frédéric, Hernandez, Pilar, Kanyuka, Kostya, Lang, Daniel, Mascher, Martin, Nilsen, Kirby, Paux, Etienne, Pozniak, Curtis J., Ramirez-Gonzalez, Ricardo H., Šimková, Hana, Small, Ian, Spannagl, Manuel, Swarbreck, David and Uauy, Cristobal (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403):eaar7191. ISSN 0036-8075 (Print), 1095-9203 (Online) (doi:https://doi.org/10.1126/science.aar7191)

wheat yields and production

Appels, Rudi, Eversole, Kellye, Feuillet, Catherine, Keller, Beat, Rogers, Jane, Stein, Nils, Pozniak, Curtis J., Stein, Nils, Choulet, Frédéric, Distelfeld, Assaf, Eversole, Kellye, Poland, Jesse, Rogers, Jane, Ronen, Gil, Sharpe, Andrew G., Pozniak, Curtis, Ronen, Gil, Stein, Nils, Barad, Omer, Baruch, Kobi, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Sharpe, Andrew G., Ben-Zvi, Gil, Josselin, Ambre-Aurore, Stein, Nils, Mascher, Martin, Himmelbach, Axel, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Rogers, Jane, Balfourier, François, Gutierrez-Gonzalez, Juan, Hayden, Matthew, Josselin, Ambre-Aurore, Koh, ChuShin, Muehlbauer, Gary, Pasam, Raj K., Paux, Etienne, Pozniak, Curtis J., Rigault, Philippe, Sharpe, Andrew G., Tibbits, Josquin, Tiwari, Vijay, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Josselin, Ambre-Aurore, Rogers, Jane, Spannagl, Manuel, Choulet, Frédéric, Lang, Daniel, Gundlach, Heidrun, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Ormanbekova, Danara, Paux, Etienne, Prade, Verena, Šimková, Hana, Wicker, Thomas, Choulet, Frédéric, Spannagl, Manuel, Swarbreck, David, Rimbert, Hélène, Felder, Marius, Guilhot, Nicolas, Gundlach, Heidrun, Haberer, Georg, Kaithakottil, Gemy, Keilwagen, Jens, Lang, Daniel, Leroy, Philippe, Lux, Thomas, Mayer, Klaus F. X., Twardziok, Sven, Venturini, Luca, Appels, Rudi, Rimbert, Hélène, Choulet, Frédéric, Juhász, Angéla, Keeble-Gagnère, Gabriel, Choulet, Frédéric, Spannagl, Manuel, Lang, Daniel, Abrouk, Michael, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Wicker, Thomas, Choulet, Frédéric, Wicker, Thomas, Gundlach, Heidrun, Lang, Daniel, Spannagl, Manuel, Lang, Daniel, Spannagl, Manuel, Appels, Rudi, Fischer, Iris, Uauy, Cristobal, Borrill, Philippa, Ramirez-Gonzalez, Ricardo H., Appels, Rudi, Arnaud, Dominique, Chalabi, Smahane, Chalhoub, Boulos, Choulet, Frédéric, Cory, Aron, Datla, Raju, Davey, Mark W., Hayden, Matthew, Jacobs, John, Lang, Daniel, Robinson, Stephen J., Spannagl, Manuel, Steuernagel, Burkhard, Tibbits, Josquin, Tiwari, Vijay, van Ex, Fred, Wulff, Brande B. H., Pozniak, Curtis J., Robinson, Stephen J., Sharpe, Andrew G., Cory, Aron, Benhamed, Moussa, Paux, Etienne, Bendahmane, Abdelhafid, Concia, Lorenzo, Latrasse, David, Rogers, Jane, Jacobs, John, Alaux, Michael, Appels, Rudi, Bartoš, Jan, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, Letellier, Thomas, Olsen, Odd-Arne, Šimková, Hana, Singh, Kuldeep, Valárik, Miroslav, van der Vossen, Edwin, Vautrin, Sonia, Weining, Song, Korol, Abraham, Frenkel, Zeev, Fahima, Tzion, Glikson, Vladimir, Raats, Dina, Rogers, Jane, Tiwari, Vijay, Gill, Bikram, Paux, Etienne, Poland, Jesse, Doležel, Jaroslav, Číhalíková, Jarmila, Šimková, Hana, Toegelová, Helena, Vrána, Jan, Sourdille, Pierre, Darrier, Benoit, Appels, Rudi, Spannagl, Manuel, Lang, Daniel, Fischer, Iris, Ormanbekova, Danara, Prade, Verena, Barabaschi, Delfina, Cattivelli, Luigi, Hernandez, Pilar, Galvez, Sergio, Budak, Hikmet, Steuernagel, Burkhard, Jones, Jonathan D. G., Witek, Kamil, Wulff, Brande B. H., Yu, Guotai, Small, Ian, Melonek, Joanna, Zhou, Ruonan, Juhász, Angéla, Belova, Tatiana, Appels, Rudi, Olsen, Odd-Arne, Kanyuka, Kostya, King, Robert, Nilsen, Kirby, Walkowiak, Sean, Pozniak, Curtis J., Cuthbert, Richard, Datla, Raju, Knox, Ron, Wiebe, Krysta, Xiang, Daoquan, Rohde, Antje, Golds, Timothy, Doležel, Jaroslav, Čížková, Jana, Tibbits, Josquin, Budak, Hikmet, Akpinar, Bala Ani, Biyiklioglu, Sezgi, Muehlbauer, Gary, Poland, Jesse, Gao, Liangliang, Gutierrez-Gonzalez, Juan, N’Daiye, Amidou, Doležel, Jaroslav, Šimková, Hana, Číhalíková, Jarmila, Kubaláková, Marie, Šafář, Jan, Vrána, Jan, Berges, Hélène, Bellec, Arnaud, Vautrin, Sonia, Alaux, Michael, Alfama, Françoise, Adam-Blondon, Anne-Françoise, Flores, Raphael, Guerche, Claire, Letellier, Thomas, Loaec, Mikaël, Quesneville, Hadi, Pozniak, Curtis J., Sharpe, Andrew G., Walkowiak, Sean, Budak, Hikmet, Condie, Janet, Ens, Jennifer, Koh, ChuShin, Maclachlan, Ron, Tan, Yifang, Wicker, Thomas, Choulet, Frédéric, Paux, Etienne, Alberti, Adriana, Aury, Jean-Marc, Balfourier, François, Barbe, Valérie, Couloux, Arnaud, Cruaud, Corinne, Labadie, Karine, Mangenot, Sophie, Wincker, Patrick, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Singh, Kuldeep, Chhuneja, Parveen, Gupta, Om Prakash, Jindal, Suruchi, Kaur, Parampreet, Malik, Palvi, Sharma, Priti, Yadav, Bharat, Singh, Nagendra K., Khurana, JitendraP., Chaudhary, Chanderkant, Khurana, Paramjit, Kumar, Vinod, Mahato, Ajay, Mathur, Saloni, Sevanthi, Amitha, Sharma, Naveen, Tomar, Ram Sewak, Rogers, Jane, Jacobs, John, Alaux, Michael, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, van der Vossen, Edwin, Vautrin, Sonia, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Bartoš, Jan, Holušová, Kateřina, Plíhal, Ondřej, Clark, Matthew D., Heavens, Darren, Kettleborough, George, Wright, Jon, Valárik, Miroslav, Abrouk, Michael, Balcárková, Barbora, Holušová, Kateřina, Hu, Yuqin, Luo, Mingcheng, Salina, Elena, Ravin, Nikolai, Skryabin, Konstantin, Beletsky, Alexey, Kadnikov, Vitaly, Mardanov, Andrey, Nesterov, Michail, Rakitin, Andrey, Sergeeva, Ekaterina, Handa, Hirokazu, Kanamori, Hiroyuki, Katagiri, Satoshi, Kobayashi, Fuminori, Nasuda, Shuhei, Tanaka, Tsuyoshi, Wu, Jianzhong, Appels, Rudi, Hayden, Matthew, Keeble-Gagnère, Gabriel, Rigault, Philippe, Tibbits, Josquin, Olsen, Odd-Arne, Belova, Tatiana, Cattonaro, Federica, Jiumeng, Min, Kugler, Karl, Mayer, Klaus F. X., Pfeifer, Matthias, Sandve, Simen, Xun, Xu, Zhan, Bujie, Šimková, Hana, Abrouk, Michael, Batley, Jacqueline, Bayer, Philipp E., Edwards, David, Hayashi, Satomi, Toegelová, Helena, Tulpová, Zuzana, Visendi, Paul, Weining, Song, Cui, Licao, Du, Xianghong, Feng, Kewei, Nie, Xiaojun, Tong, Wei, Wang, Le, Borrill, Philippa, Gundlach, Heidrun, Galvez, Sergio, Kaithakottil, Gemy, Lang, Daniel, Lux, Thomas, Mascher, Martin, Ormanbekova, Danara, Prade, Verena, Ramirez-Gonzalez, Ricardo H., Spannagl, Manuel, Stein, Nils, Uauy, Cristobal, Venturini, Luca, Stein, Nils, Appels, Rudi, Eversole, Kellye, Rogers, Jane, Borrill, Philippa, Cattivelli, Luigi, Choulet, Frédéric, Hernandez, Pilar, Kanyuka, Kostya, Lang, Daniel, Mascher, Martin, Nilsen, Kirby, Paux, Etienne, Pozniak, Curtis J., Ramirez-Gonzalez, Ricardo H., Šimková, Hana, Small, Ian, Spannagl, Manuel, Swarbreck, David and Uauy, Cristobal (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403):eaar7191. ISSN 0036-8075 (Print), 1095-9203 (Online) (doi:https://doi.org/10.1126/science.aar7191)