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Next generation sequencing and germplasm resources

Next generation sequencing and germplasm resources

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

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Abstract

DNA sequencing technology is advancing at an astounding rate, with rapid increases in data volumes and quality combined with reducing costs. The availability of this technology opens novel avenues for the analysis of plant germplasm resources. Where previous studies analysed a limited number of phenotypic or molecular genetic markers, it is now possible to re-sequence whole genomes to characterise diversity at a resolution of each nucleotide. Current approaches combine high resolution genetic markers with genome sequencing both for reference assembly and genotyping by sequencing. As next generation sequencing technologies continue to advance, we approach the potential to catalogue and characterise all genome variations across

Item Type: Book Section
Uncontrolled Keywords: Genome sequencing; Pangenome; Illumina; Ion Torrent; AB SOLiD; Pacific biosciences; Oxford nanopore; Roche 454; Single nucleotide polymorphisms; Bioinformatics
Subjects: S Agriculture > S Agriculture (General)
Faculty / Department / Research Group: Faculty of Engineering & Science
Faculty of Engineering & Science > Natural Resources Institute
Faculty of Engineering & Science > Natural Resources Institute > Agriculture, Health & Environment Department
Faculty of Engineering & Science > Natural Resources Institute > Molecular Virology and Entomology Research Group
Last Modified: 02 Nov 2017 17:27
Selected for GREAT 2016: None
Selected for GREAT 2017: None
Selected for GREAT 2018: None
URI: http://gala.gre.ac.uk/id/eprint/17913

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