Items where Author is "Batley, Jacqueline"

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AB SOLiD Aegilops tauschii autoSNP BAC Bioinformatics Black Gram Husk BNG map Centromere Cereals chickpea Chromsosomes cicer Conversion Processes cytogenetics database diversity Double Haploid evolution F2 Individual Flow sorting Gene content variation Gene loss genome genome assembly genome diversity Genome sequencing Genome-wide Recombination Genotyping by sequencing haplotype Heterozygous SNPs Illumina Ion Torrent Leptosphaeria maculans Markers Next-generation sequencing – SASSY – BAC – Assembly – 7DS – Triticum aestivum – Saccharum spp NGS Optical mapping Oxford nanopore Pacific biosciences pangenome Physical Map Polyploidy Re-sequencing Recombinant Inbred Line Recombination Bin Recombination Hotspot Recombination Map Reference Cultivar Reference Genome Reference Genome Sequence Roche 454 Sequencing single nucleotide polymorphisms Supplementary Table Triticum aestivum Wheat wheat genome sequence wheat yields and production

Number of items: 74.

AB SOLiD

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:10.1007/978-94-007-7572-5_15)

Aegilops tauschii

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:10.1016/j.nbt.2018.03.003)

autoSNP

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:10.3390/biology1020370)

BAC

Bioinformatics

Black Gram Husk

Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-5752 (Print), 1432-2242 (Online) (doi:10.1007/s00122-015-2488-y)

BNG map

Centromere

Cereals

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:10.3390/biology2041357)

chickpea

Ruperao, Pradeep, Chan, Chon-Kit Kenneth, Azam, Sarwar, Karafiátová, Miroslava, Hayashi, Satomi, Čížková, Jana, Saxena, Rachit K., Šimková, Hana, Song, Chi, Vrána, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M., Millán, Teresa, Singh, Karam B., Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Doležel, Jaroslav, Varshney, Rajeev K. and Edwards, David (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:10.1111/pbi.12182)

Chromsosomes

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:10.1111/pbi.12513)

cicer

Conversion Processes

cytogenetics

database

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:10.1111/tpj.13515)

diversity

Lai, Kaitao, Lorenc, Michał T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon-Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline and Edwards, David (2015) Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal, 13 (1). pp. 97-104. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:10.1111/pbi.12240)

Double Haploid

evolution

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:10.1111/pbi.12044)

F2 Individual

Flow sorting

Gene content variation

Golicz, Agnieszka A., Martinez, Paula A., Zander, Manuel, Patel, Dhwani A., Van De Wouw, Angela P., Visendi, Paul, Fitzgerald, Timothy L., Edwards, David and Batley, Jacqueline (2014) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics, 15 (2). pp. 189-196. ISSN 1438-793X (Print), 1438-7948 (Online) (doi:10.1007/s10142-014-0412-1)

Gene loss

genome

genome assembly

genome diversity

Genome sequencing

Genome-wide Recombination

Genotyping by sequencing

haplotype

Heterozygous SNPs

Illumina

Ion Torrent

Leptosphaeria maculans

Markers

Next-generation sequencing – SASSY – BAC – Assembly – 7DS – Triticum aestivum – Saccharum spp

Visendi, Paul, Berkman, Paul J., Hayashi, Satomi, Golicz, Agnieszka A., Bayer, Philipp E., Ruperao, Pradeep, Hurgobin, Bhavna, Montenegro, Juan, Chan, Chon-Kit Kenneth, Staňková, Helena, Batley, Jacqueline, Šimková, Hana, Doležel, Jaroslav and Edwards, David (2016) An efficient approach to BAC based assembly of complex genomes. Plant Methods, 12 (2). pp. 1-9. ISSN 1746-4811 (Print), 1746-4811 (Online) (doi:10.1186/s13007-016-0107-9)

NGS

Optical mapping

Oxford nanopore

Pacific biosciences

pangenome

Physical Map

Polyploidy

Re-sequencing

Recombinant Inbred Line

Recombination Bin

Recombination Hotspot

Recombination Map

Reference Cultivar

Reference Genome

Reference Genome Sequence

Roche 454

Sequencing

single nucleotide polymorphisms

Supplementary Table

Triticum aestivum

Wheat

Appels, Rudi, Eversole, Kellye, Feuillet, Catherine, Keller, Beat, Rogers, Jane, Stein, Nils, Pozniak, Curtis J., Stein, Nils, Choulet, Frédéric, Distelfeld, Assaf, Eversole, Kellye, Poland, Jesse, Rogers, Jane, Ronen, Gil, Sharpe, Andrew G., Pozniak, Curtis, Ronen, Gil, Stein, Nils, Barad, Omer, Baruch, Kobi, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Sharpe, Andrew G., Ben-Zvi, Gil, Josselin, Ambre-Aurore, Stein, Nils, Mascher, Martin, Himmelbach, Axel, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Rogers, Jane, Balfourier, François, Gutierrez-Gonzalez, Juan, Hayden, Matthew, Josselin, Ambre-Aurore, Koh, ChuShin, Muehlbauer, Gary, Pasam, Raj K., Paux, Etienne, Pozniak, Curtis J., Rigault, Philippe, Sharpe, Andrew G., Tibbits, Josquin, Tiwari, Vijay, Choulet, Frédéric, Keeble-Gagnère, Gabriel, Mascher, Martin, Josselin, Ambre-Aurore, Rogers, Jane, Spannagl, Manuel, Choulet, Frédéric, Lang, Daniel, Gundlach, Heidrun, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Ormanbekova, Danara, Paux, Etienne, Prade, Verena, Šimková, Hana, Wicker, Thomas, Choulet, Frédéric, Spannagl, Manuel, Swarbreck, David, Rimbert, Hélène, Felder, Marius, Guilhot, Nicolas, Gundlach, Heidrun, Haberer, Georg, Kaithakottil, Gemy, Keilwagen, Jens, Lang, Daniel, Leroy, Philippe, Lux, Thomas, Mayer, Klaus F. X., Twardziok, Sven, Venturini, Luca, Appels, Rudi, Rimbert, Hélène, Choulet, Frédéric, Juhász, Angéla, Keeble-Gagnère, Gabriel, Choulet, Frédéric, Spannagl, Manuel, Lang, Daniel, Abrouk, Michael, Haberer, Georg, Keeble-Gagnère, Gabriel, Mayer, Klaus F. X., Wicker, Thomas, Choulet, Frédéric, Wicker, Thomas, Gundlach, Heidrun, Lang, Daniel, Spannagl, Manuel, Lang, Daniel, Spannagl, Manuel, Appels, Rudi, Fischer, Iris, Uauy, Cristobal, Borrill, Philippa, Ramirez-Gonzalez, Ricardo H., Appels, Rudi, Arnaud, Dominique, Chalabi, Smahane, Chalhoub, Boulos, Choulet, Frédéric, Cory, Aron, Datla, Raju, Davey, Mark W., Hayden, Matthew, Jacobs, John, Lang, Daniel, Robinson, Stephen J., Spannagl, Manuel, Steuernagel, Burkhard, Tibbits, Josquin, Tiwari, Vijay, van Ex, Fred, Wulff, Brande B. H., Pozniak, Curtis J., Robinson, Stephen J., Sharpe, Andrew G., Cory, Aron, Benhamed, Moussa, Paux, Etienne, Bendahmane, Abdelhafid, Concia, Lorenzo, Latrasse, David, Rogers, Jane, Jacobs, John, Alaux, Michael, Appels, Rudi, Bartoš, Jan, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, Letellier, Thomas, Olsen, Odd-Arne, Šimková, Hana, Singh, Kuldeep, Valárik, Miroslav, van der Vossen, Edwin, Vautrin, Sonia, Weining, Song, Korol, Abraham, Frenkel, Zeev, Fahima, Tzion, Glikson, Vladimir, Raats, Dina, Rogers, Jane, Tiwari, Vijay, Gill, Bikram, Paux, Etienne, Poland, Jesse, Doležel, Jaroslav, Číhalíková, Jarmila, Šimková, Hana, Toegelová, Helena, Vrána, Jan, Sourdille, Pierre, Darrier, Benoit, Appels, Rudi, Spannagl, Manuel, Lang, Daniel, Fischer, Iris, Ormanbekova, Danara, Prade, Verena, Barabaschi, Delfina, Cattivelli, Luigi, Hernandez, Pilar, Galvez, Sergio, Budak, Hikmet, Steuernagel, Burkhard, Jones, Jonathan D. G., Witek, Kamil, Wulff, Brande B. H., Yu, Guotai, Small, Ian, Melonek, Joanna, Zhou, Ruonan, Juhász, Angéla, Belova, Tatiana, Appels, Rudi, Olsen, Odd-Arne, Kanyuka, Kostya, King, Robert, Nilsen, Kirby, Walkowiak, Sean, Pozniak, Curtis J., Cuthbert, Richard, Datla, Raju, Knox, Ron, Wiebe, Krysta, Xiang, Daoquan, Rohde, Antje, Golds, Timothy, Doležel, Jaroslav, Čížková, Jana, Tibbits, Josquin, Budak, Hikmet, Akpinar, Bala Ani, Biyiklioglu, Sezgi, Muehlbauer, Gary, Poland, Jesse, Gao, Liangliang, Gutierrez-Gonzalez, Juan, N’Daiye, Amidou, Doležel, Jaroslav, Šimková, Hana, Číhalíková, Jarmila, Kubaláková, Marie, Šafář, Jan, Vrána, Jan, Berges, Hélène, Bellec, Arnaud, Vautrin, Sonia, Alaux, Michael, Alfama, Françoise, Adam-Blondon, Anne-Françoise, Flores, Raphael, Guerche, Claire, Letellier, Thomas, Loaec, Mikaël, Quesneville, Hadi, Pozniak, Curtis J., Sharpe, Andrew G., Walkowiak, Sean, Budak, Hikmet, Condie, Janet, Ens, Jennifer, Koh, ChuShin, Maclachlan, Ron, Tan, Yifang, Wicker, Thomas, Choulet, Frédéric, Paux, Etienne, Alberti, Adriana, Aury, Jean-Marc, Balfourier, François, Barbe, Valérie, Couloux, Arnaud, Cruaud, Corinne, Labadie, Karine, Mangenot, Sophie, Wincker, Patrick, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Singh, Kuldeep, Chhuneja, Parveen, Gupta, Om Prakash, Jindal, Suruchi, Kaur, Parampreet, Malik, Palvi, Sharma, Priti, Yadav, Bharat, Singh, Nagendra K., Khurana, JitendraP., Chaudhary, Chanderkant, Khurana, Paramjit, Kumar, Vinod, Mahato, Ajay, Mathur, Saloni, Sevanthi, Amitha, Sharma, Naveen, Tomar, Ram Sewak, Rogers, Jane, Jacobs, John, Alaux, Michael, Bellec, Arnaud, Berges, Hélène, Doležel, Jaroslav, Feuillet, Catherine, Frenkel, Zeev, Gill, Bikram, Korol, Abraham, van der Vossen, Edwin, Vautrin, Sonia, Gill, Bikram, Kaur, Gaganpreet, Luo, Mingcheng, Sehgal, Sunish, Bartoš, Jan, Holušová, Kateřina, Plíhal, Ondřej, Clark, Matthew D., Heavens, Darren, Kettleborough, George, Wright, Jon, Valárik, Miroslav, Abrouk, Michael, Balcárková, Barbora, Holušová, Kateřina, Hu, Yuqin, Luo, Mingcheng, Salina, Elena, Ravin, Nikolai, Skryabin, Konstantin, Beletsky, Alexey, Kadnikov, Vitaly, Mardanov, Andrey, Nesterov, Michail, Rakitin, Andrey, Sergeeva, Ekaterina, Handa, Hirokazu, Kanamori, Hiroyuki, Katagiri, Satoshi, Kobayashi, Fuminori, Nasuda, Shuhei, Tanaka, Tsuyoshi, Wu, Jianzhong, Appels, Rudi, Hayden, Matthew, Keeble-Gagnère, Gabriel, Rigault, Philippe, Tibbits, Josquin, Olsen, Odd-Arne, Belova, Tatiana, Cattonaro, Federica, Jiumeng, Min, Kugler, Karl, Mayer, Klaus F. X., Pfeifer, Matthias, Sandve, Simen, Xun, Xu, Zhan, Bujie, Šimková, Hana, Abrouk, Michael, Batley, Jacqueline, Bayer, Philipp E., Edwards, David, Hayashi, Satomi, Toegelová, Helena, Tulpová, Zuzana, Visendi, Paul, Weining, Song, Cui, Licao, Du, Xianghong, Feng, Kewei, Nie, Xiaojun, Tong, Wei, Wang, Le, Borrill, Philippa, Gundlach, Heidrun, Galvez, Sergio, Kaithakottil, Gemy, Lang, Daniel, Lux, Thomas, Mascher, Martin, Ormanbekova, Danara, Prade, Verena, Ramirez-Gonzalez, Ricardo H., Spannagl, Manuel, Stein, Nils, Uauy, Cristobal, Venturini, Luca, Stein, Nils, Appels, Rudi, Eversole, Kellye, Rogers, Jane, Borrill, Philippa, Cattivelli, Luigi, Choulet, Frédéric, Hernandez, Pilar, Kanyuka, Kostya, Lang, Daniel, Mascher, Martin, Nilsen, Kirby, Paux, Etienne, Pozniak, Curtis J., Ramirez-Gonzalez, Ricardo H., Šimková, Hana, Small, Ian, Spannagl, Manuel, Swarbreck, David and Uauy, Cristobal (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403):eaar7191. ISSN 0036-8075 (Print), 1095-9203 (Online) (doi:10.1126/science.aar7191)

wheat genome sequence

wheat yields and production

This list was generated on Sun Dec 22 14:32:33 2024 UTC.