Items where Subject is "QR355 Virology"

Library of Congress Subject Areas (98)
- Q Science (98)
  - QR Microbiology (98)
    - QR355 Virology (98)

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(CMD) (EACMV) 95% confidence interval acceptability adaptive-decision model adherence adolescents aedes albopictus Africa African armyworm age-structured model ageing alata AMR anopheles Anthrax toxin antimicrobial resistance antiretroviral drugs antiretroviral treatment Antisense antiviral aphids ART Asia autoimmune disease bacilliform virus baculovirus badnavirus banana banana bunchy top virus banana-streak-virus Bangaladesh barley barrier barriers begomoviruses Bemisia tabaci Betaflexiviridae biogeography biological control biomedicine biotype body mass index burden of disease BYDV BYDV‐PAV Caribbean cassava Cassava brown streak disease cassava brown streak ipomoviruses cassava brown streak viruses cassava mosaic disease cassava mosaic virus cassava mosaic viruses cauliflower-mosaic-virus causal loop model Cell biology cellular receptor cereal aphids change point children China ChIP chronic disease chronic pain co-infection community engagement competitive advantage coronavirus disease 2019 coronavirus disease-2019 covid COVID-19 COVID-19 and tuberculosis COVID-19 lockdown critical coverage rate Cytochrome oxidase Côte d'Ivoire data fitting days on mechanical ventilation death delayed enteral nutrition denaturing gradient gel electrophoresis (DGGE) dengue deterioration dioscorea Dioscorea spp. disability-adjusted life years disease disease resistance diversity dna dna viruses dolichos yellow mosaic disease drug resistance drug-resistant tuberculosis dying E coli E. coli early enteral nutrition early virus detection East African cassava mosaic virus Eastern Africa effective reproductive number ELISA emerging infectious disease Endocytosis endogenous badnaviral elements endogenous retrovirus enteral nutrition environmental conditions epidemic waves epidemiology expression facilitator facilitators feline aminopeptidase N flower strips fluvoxamine food security gastrointestinal intolerance Geminiviridae geminivirus Geminivirus diversity gene expression genome genomic typing genomics genotype genotype environment interaction Ghana glycated haemoglobin H5N1 health health system health systems helper component protease helper virus hepatitis HERV high yield histone HIV HIV ⁄ AIDS HIV-TB HIV/AIDS HLA horticulture Host choice host decoy trap Host-seeking vectors HTS Human blood index I gene immunity immunity waning Indian Jatropha Mosaic Disease Indian subcontinent infection infectious disease influenza influenza-like illness (ILI) interferon (IFN)-inducible transmembrane (IFITM) protein interleukin intervention timing IPM Ipomovirus isothermal amplification legume Leishmania length of hospital stay Leptospirosis linkage to care lipid parameters live SARS virus lockdown long non-coding RNA malaria vectors mathematical model mathematical modelling mean first passage time medications mental health meta-analysis methylation migratory pest mitigation mixed infections mixed-methods mobile genetic elements model modeling molecular epidemiology molecular genetics mortality mosaic-virus mosquito larvae mosquito trap multiple sclerosis multiplex PCR natural enemies neglected zoonotic diseases Nepal Nepali community network meta-analysis neuraminidase inhibitor neutralizing titers newly reported cases next-generation sequencing Nipah virus non-pharmaceutical interventions non-suppression Non-viral novel corona virus nucleopolyhedrovirus nucleotide-sequence obstruction odds ratios older people Onchocerca volvulus Onchocerciasis One Health Ovipositing vectors paediatric tuberculosis pandemic pandemic preparedness parasite plug parenteral nutrition PARTICLE PASET patient engagement patients' perspective PEG-dilemma penicillium phylogenetics phylogeography physiology placebo effect plant disease plant pathogenic virus political will population genetics post harvest post-TB post-tuberculosis posthuman poverty prevalence production constraints programmatic implementation programmatic management programmatic tuberculosis management promastigote pseudotype assay pseudotype virus pseudotypes public health public health changes pulmonary hypertension PYMV qualitative research Rabies rainfall rapid diagnosis rate ratios recovery relative measures remote healthcare reproduction number resistance respiratory syndrome coronavirus (MERS-CoV) restriction retrotransposable elements retroviral pseudotypes Reverse transcriptase recombinase polymerase amplification (RT-RPA) rice risk factors risk ratios RNA-seq RNAi rot routine programmatic management routine reporting RT-LAMP RT‐qPCR Salmonella (Typhimurium) sand fly SARS-CoV-2 SARS-CoV-2 Delta variant seasonality secretory gel seed systems serology signal detection Simulium damnosum Simulium damnosum (sensu lato) siRNA SIRV Sjogren’s syndrome South Africa South Asia species demarcation spirometry Spodoptera exempta stochastic difference model stomodeal valve sub-Saharan Africa Subling species sugarcane surveillance sweet potato (Ipomoea batatas) sweet potato reversion swollen shoot virus systematic review TB TB cascade TB control TB mortality TB prevention TB-HIV tears lived with disability technology temperature timeline TINA tomato transcriptome transhumanism Transmission treatment outcomes trial sequential analysis tuberculosis tuberculosis meningitis tuberculosis mortality tuberculosis outcomes tuberculosis programmatic management tungro-associated viruses tungro-bacilliform virus type 2 diabetes type I feline coronaviruses Uganda United Kingdom upper limits urbanization vaccination vaccination strategy vaccine vaccine uptake vaccines vector Vector abundance vector transmission vector-mediated transmission veterinary epidemiology viral load viral neutralization viral release assay viral sequences virus virus detection virus diagnostics virus disease epidemiology virus emergence virus evolution virus research virus tropism virus-specific primers virus-vector relationships Vit D WDV West Africa West Nile virus wheat whitefly WHO-building block winter yam Yam mosaic virus years of life lost yellow mottle virus yields Zoonoses Zoonotic disease

Number of items at this level: 458.

(CMD)

Lava Kumar, P., Akinbade, S.A., Dixon, A.G.O., Mahungu, N.M., Mutunda, M.P., Kiala, D., Londa, L. and Legg, J.P. (2009) First report of the occurence of East African cassava mosaic virus-Uganda (EACMV-UG) in Angola. Plant Pathology, 58 (2). p. 402. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/j.1365-3059.2008.02010.x)

(EACMV)

95% confidence interval

Chao, Yi-Sheng, Wu, Chao-Jung, Po, June ORCID: 0000-0001-6124-8235 , Huang, Shih-Yu, Wu, Hsing-Chien, Hsu, Hui-Ting, Cheng, Yen-Po, Lai, Yi-Chun and Chen, Wei-Chih (2023) The upper limits of risk ratios and recommendations for reporting risk ratios, odds ratios, and rate ratios. Cureus Journal of Medical Sciences, 15 (4):e37799. pp. 1-22. ISSN 2168-8184 (doi:https://doi.org/10.7759/cureus.37799)

acceptability

Purchase, Susan E., Garcia-Prats, Anthony J., De Koker, Petra, Draper, Heather R., Osman, Muhammad ORCID: 0000-0003-3818-9729 , Seddon, James A., Schaaf, H. Simon and Hesseling, Anneke C. (2019) Acceptability of a novel levofloxacin dispersible tablet formulation in young children exposed to multidrug-resistant tuberculosis. Pediatric Infectious Disease Journal, 38 (6). pp. 608-610. ISSN 0891-3668 (Print), 1532-0987 (Online) (doi:https://doi.org/10.1097/INF.0000000000002268)

adaptive-decision model

Yan, Quinling, Cheke, Robert ORCID: 0000-0002-7437-1934 and Tang, Sanyi (2022) Coupling an individual adaptive-decision model with a SIRV model of influenza vaccination reveals new insights for epidemic control. Statistics in Medicine, 42 (5). pp. 716-729. ISSN 0277-6715 (Print), 1097-0258 (Online) (doi:https://doi.org/10.1002/sim.9639)

adherence

Wasti, Sharada Prasad ORCID: 0000-0001-8833-7801 , Simkhada, Padam, Rabdal, Julian, Freeman, Janifer and van Teijlingen, Edwin (2012) Factors influencing adherence to antiretroviral treatment in Nepal: a mixed-methods study. PLoS ONE, 7 (5):e35547. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0035547)

Wasti, Sharada Prasad ORCID: 0000-0001-8833-7801 , Simkhada, Padam, Randall, Julian, Freeman, Jennifer and van Teijlingen, Edwin (2013) Barriers to and facilitators of antiretroviral therapy adherence in Nepal: a qualitative study. Journal of Health, Population and Nutrition, 30 (4):PMC3763612. pp. 410-419. ISSN 2072-1315 (Online) (doi:https://doi.org/10.3329/jhpn.v30i4.13294)

Wasti, Sharada Prasad ORCID: 0000-0001-8833-7801 , van Teijlingen, Edwin, Simkhada, padam, Randall, Julian, Baxter, Sujan, Kirkpatrick, Pamela and Singh GC, Vijay (2011) Factors influencing adherence to antiretroviral treatment in Asian developing countries: a systematic review. Tropical Medicine and International Health, 17 (1). pp. 71-81. ISSN 1360-2276 (Print), 1365-3156 (Online) (doi:https://doi.org/10.1111/j.1365-3156.2011.02888.x)

adolescents

Maena, Joel, Banke-Thomas, Aduragbemi ORCID: 0000-0002-4449-0131 , Mukiza, Nelson, Kuteesa, Cynthia Ndikuno, Kakumba, Ronald Makanga, Kataike, Hajira, Kizito, Samuel, Babirye, Juliet Allen and Nakal, Rita (2021) Determinants of viral load non-suppression among adolescents in Mbale District, Eastern Rural Uganda. AIDS Research and Therapy, 18:91. ISSN 1742-6405 (Print), 1742-6405 (Online) (doi:https://doi.org/10.1186/s12981-021-00408-1)

du Preez, Karen, Osman, Muhammad ORCID: 0000-0003-3818-9729 , Seddon, James A, Naidoo, Pren, Schaaf, H Simon, Munch, Zahn, Dunbar, Rory, Mvusi, Lindiwe, Dlamini, Sicelo S and Hesseling, Anneke C (2021) The Impact of the evolving human immunodeficiency virus response on the epidemiology of tuberculosis in South African children and adolescents. Clinical Infectious Diseases, 73 (4). e967-e975. ISSN 1058-4838 (Print), 1537-6591 (Online) (doi:https://doi.org/10.1093/cid/ciab095)

aedes albopictus

Cheng, Qu, Liu, Yan, Wang, Xia, Tang, Sanyi and Cheke, Robert ORCID: 0000-0002-7437-1934 (2023) The relative importance of key meteorological factors affecting numbers of mosquito vectors of dengue fever. PLoS Neglected Tropical Diseases, 17 (4):e0011247. pp. 1-21. ISSN 1935-2727 (Print), 1935-2735 (Online) (doi:https://doi.org/10.1371/journal.pntd.0011247)

Africa

Grzywacz, David, Mushobozi, Wilfred L., Parnell, Mark, Jolliffe, Flavia and Wilson, Kenneth (2007) Evaluation of Spodoptera exempta nucleopolyhedrovirus (SpexNPV) for the field control of African armyworm (Spodoptera exempta) in Tanzania. Crop Protection, 27 (1). pp. 17-24. ISSN 0261-2194 (doi:https://doi.org/10.1016/j.cropro.2007.04.005)

African armyworm

age-structured model

Wu, YuanYuan, Zhou, Weike, Tang, Sanyi, Cheke, Robert ORCID: 0000-0002-7437-1934 and Wang, Xia (2023) Prediction of the next major outbreak of COVID-19 in Mainland China and a vaccination strategy for it. Royal Society Open Science, 10:230655. pp. 1-14. ISSN 2054-5703 (Online) (doi:https://doi.org/10.1098/rsos.230655)

ageing

Dunham, M., Bacon, L., Cottom, S., McCrone, P., Mehrpouya, H., Spyridonis, F., Thompson, Trevor ORCID: 0000-0001-9880-782X and Schofield, P. (2022) Chronic pain through COVID. Frontiers in Pain Research, 3:937652. pp. 1-10. ISSN 2673-561X (Online) (doi:https://doi.org/10.3389/fpain.2022.937652)

alata

Kenyon, Lawrence, Lebas, B.S.M. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2008) Yams (Dioscorea spp.) from the South Pacific Islands contain many novel badnaviruses: Implications for international movement of yam germplasm. Archives of Virology, 153 (5). pp. 877-889. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-008-0062-5)

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

AMR

Muloi, Dishon, Hassell, James, Wee, Bryan, Ward, Melissa, Bettridge, Judy ORCID: 0000-0002-3917-4660 , Kivali, Velma, Kiyong'a, Alice, Ndinda, Christine, Gitahi, Nduhiu, Ouko, Tom, Imboma, Titus, Akoko, James, Murungi, Maurice, Njoroge, Samuel, Muinde, Patrick, Alumasa, Lorren, Kaitho, Titus, Amanya, Frederic, Ogendo, Allan, van Bunnik, Bram, Kiiru, John, Robinson, Timothy, Kang'ethe, Erastus, Kariuki, Sam, Pederson, Amy, Fevre, Eric and Woolhouse, Mark (2022) Genomic epidemiology of Escherichia coli: antimicrobial resistance through a One Health lens in sympatric humans, livestock and peri-domestic wildlife in Nairobi, Kenya. BMC Medicine, 20:471. pp. 1-11. ISSN 1741-7015 (Online) (doi:https://doi.org/10.1186/s12916-022-02677-7)

anopheles

Zembere, Kennedy, Chirombo, James, Nasoni, Peter, McDermott, Daniel, Divala, Lizzie, Hawkes, Frances ORCID: 0000-0002-0964-3702 and Jones, Christopher M. (2022) The human-baited host decoy trap (HDT) is an efficient sampling device for exophagic malaria mosquitoes within irrigated lands in southern Malawi. Scientific reports, 12:3428. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-022-07422-x)

Anthrax toxin

Dyer, Paul D.R., Shepherd, Thomas R., Gollings, Alexander S., Shorter, Susan A., Gorringe-Pattrick, Monique A. M., Tang, Chun-Kit, Cattoz, Beatrice N., Baillie, Les, Griffiths, Peter C. ORCID: 0000-0002-6686-1271 and Richardson, Simon C.W. ORCID: 0000-0002-7927-0649 (2015) Disarmed anthrax toxin delivers antisense oligonucleotides and siRNA with high efficiency and low toxicity. Journal of Controlled Release, 220 (A). pp. 316-328. ISSN 0168-3659 (doi:https://doi.org/10.1016/j.jconrel.2015.10.054)

antimicrobial resistance

antiretroviral drugs

antiretroviral treatment

Antisense

antiviral

Su, Ching-Yao, Wang, Shi-Yun, Shie, Jiun-Jie, Jeng, King-Song, Temperton, Nigel J. ORCID: 0000-0002-7978-3815 , Fang, Jim-Min, Wong, Chi-Huey and Cheng, Yih-Shyun E. (2008) In vitro evaluation of neuraminidase inhibitors using the neuraminidase-dependent release assay of hemagglutinin-pseudotyped viruses. Antiviral Research, 79 (3). pp. 199-205. ISSN 0166-3542 (doi:https://doi.org/10.1016/j.antiviral.2008.03.002)

aphids

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

ART

Asia

autoimmune disease

Moyes, David L., Martin, Alex, Sawcer, Stephen, Temperton, Nigel ORCID: 0000-0002-7978-3815 , Worthington, Jane, Griffiths, David J. and Venables, Patrick J. (2005) The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease. Genomics, 86 (3). pp. 337-341. ISSN 0888-7543 (doi:https://doi.org/10.1016/j.ygeno.2005.06.004)

bacilliform virus

Bousalem, M., Douzery, E.J.P. and Seal, S.E. ORCID: 0000-0002-3952-1562 (2008) Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences. Archives of Virology, 153 (6). pp. 1085-1102. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-008-0095-9)

baculovirus

badnavirus

Silva, Goncalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:https://doi.org/10.3389/fpls.2022.846989)

banana

banana bunchy top virus

Lava Kumar, P., Ayodele, M., Oben, T.T., Mahungu, N.M., Beed, F., Coyne, D., Londa, L., Mutunda, M.P., Kiala, D. and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2009) First report of Banana bunchy top virus in banana and plantain (Musa spp.) in Angola. Plant Pathology, 58 (2). p. 402. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/j.1365-3059.2008.01974.x)

banana-streak-virus

Bangaladesh

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Rekha, A.R., Alam, S.N., Kader, K.A., Cork, Alan and Colvin, John (2006) A novel begomovirus with distinct genomic and phenotypic features infects tomato in Bangladesh. Plant Pathology, 55 (2). p. 290. ISSN 0032-0862 (doi:https://doi.org/10.1111/j.1365-3059.2005.01275.x)

barley

Alquicer, Glenda, Ibrahim, Emad, Maruthi, M.N. ORCID: 0000-0002-8060-866X and Kundu, Jiban Kumar (2023) Identifying putative resistance genes for barley yellow dwarf virus‐PAV in wheat and barley. Viruses, 15:716. pp. 1-25. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15030716)

barrier

barriers

begomoviruses

Aswatha Narayana, D.S., Rangaswamy, K.T., Shankarappa, K.S., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Lakshminarayana Reddy, C.N., Rekha, A.R. and Keshava Murthy, K.V. (2007) Distinct begomoviruses closely related to cassava mosaic viruses cause Indian Jatropha mosaic disease. International Journal of Virology, 3 (1). pp. 1-11. ISSN 1816-4900 (doi:https://doi.org/10.3923/ijv.2007.1.11)

Bemisia tabaci

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Manjunatha, B., Rekha, A.R., Govindappa, M.R., Colvin, John and Muniyappa, V. (2006) Dolichos yellow mosaic virus belongs to a distinct lineage of Old World begomoviruses; its biological and molecular properties. Annals of Applied Biology, 149 (2). pp. 187-195. ISSN 0003-4746 (doi:https://doi.org/10.1111/j.1744-7348.2006.00075.x)

Betaflexiviridae

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

biogeography

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Rekha, A.R. and Muniyappa, V. (2007) Pumpkin yellow vein mosaic disease is caused by two distinct begomoviruses: complete viral sequences and comparative transmission by an indigenous Bemisia tabaci and the introduced B-biotype. EPPO Bulletin, 37 (2). pp. 412-419. ISSN 0250-8052 (doi:https://doi.org/10.1111/j.1365-2338.2007.01127.x)

biological control

biomedicine

Pentaris, Panagiotis ORCID: 0000-0001-5593-8555 (2021) Dying in a transhumanist and posthuman society. Routledge Studies in the Sociology of Health and Illness . Routledge - Taylor and Francis Group, London. ISBN 978-0367542177

biotype

Maruthi, M.N. ORCID: 0000-0002-8060-866X , Rekha, A.R., Mirza, S.H., Alam, S.N. and Colvin, John (2007) PCR-based detection and partial genome sequencing indicate high genetic diversity in Bangladeshi begomoviruses and their whitefly vector, Bemisia tabaci. Virus Genes, 34 (3). pp. 373-385. ISSN 0920-8569 (doi:https://doi.org/10.1007/s11262-006-0027-2)

body mass index

Ojo, Omorogieva ORCID: 0000-0003-0071-3652 , Wang, Xiaohua, Ojo, Osarhumwese, Orjih, Edith, Pavithran, Nivedita, Adegboye, Amanda ORCID: 0000-0003-2780-0350 , Feng, Qian-Qian and Mccrone, Paul ORCID: 0000-0001-7001-4502 (2022) The effects of COVID-19 lockdown on glycaemic control and lipid profile in patients with type 2 diabetes: a systematic review and meta-analysis. International Journal of Environmental Research and Public Health, 19 (3):1095. ISSN 1660-4601 (Online) (doi:https://doi.org/10.3390/ijerph19031095)

burden of disease

Di Bari, Carlotta, Venkateswaran, Narmada, Fastl, Christina, Gabriël, Sarah, Grace, Delia ORCID: 0000-0002-0195-9489 , Havelaar, Arie H., Huntington, Ben, Patterson, Grace T., Rushton, Jonathan, Speybroeck, Niko, Torgerson, Paul, Pigott, David M. and Devleesschauwer, Brecht (2023) The global burden of neglected zoonotic diseases: current state of evidence. One Health, 17:100595. pp. 1-8. ISSN 2352-7714 (Online) (doi:https://doi.org/10.1016/j.onehlt.2023.100595)

BYDV

Roudine, Sacha, Le Ralec, Anne, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Alford, Lucy, Duval, Franck, Buchard, Christelle, Llopis, Stéphanie, CLoteau, Romulad, Georges, Romain, Jambon, Olivier, van Baaren, Joan and Le Lann, Cécile (2024) Flower strips in winter reduce barley yellow dwarf virus incidence in cereal crops. Agriculture, Ecosystems and Environment, 378:109275. ISSN 0167-8809 (Print), 1873-2305 (Online) (doi:https://doi.org/10.1016/j.agee.2024.109275)

BYDV‐PAV

Caribbean

Holt, J., Pavis, C., Marquier, M., Chancellor, T.C.B. ORCID: 0000-0002-4442-7001 , Urbino, C. and Boissot, N. (2008) Insect-screened cultivation to reduce the invasion of tomato crops by Bemisia tabaci: modelling the impact on virus disease and vector. Agricultural and Forest Entomology, 10 (1). pp. 61-67. ISSN 1461-9555 (Print), 1461-9563 (Online) (doi:https://doi.org/10.1111/j.1461-9563.2007.00356.x)

cassava

Cassava brown streak disease

Kimata, B, Masinde, E, Masisila, F, Menya, R, Matondo, D, Maruthi, M.N. ORCID: 0000-0002-8060-866X and Mkamilo, G (2021) Adaptability and phenotypic stability of resistance to two viral diseases and yields traits in Cassava. American Journal of Plant Sciences, 12 (4). pp. 679-705. ISSN 2158-2742 (Print), 2158-2750 (Online) (doi:https://doi.org/10.4236/ajps.2021.124046)

cassava brown streak ipomoviruses

cassava brown streak viruses

Munguti, Florence M., Kilalo, Dora C., Yegon, Hillary K., Macharia, Isaac, Seal, Susan ORCID: 0000-0002-3952-1562 , Mwango’mbe, Agnes W., Nyaboga, Evans N. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2024) Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses. Scientific Reports, 14:12438. pp. 1-11. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-024-62249-y)

cassava mosaic disease

cassava mosaic virus

cassava mosaic viruses

cauliflower-mosaic-virus

causal loop model

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Karat, Aaron S, Khan, Munira, Meehan, Sue-Ann, von Delft, Arne, Brey, Zameer, Charalambous, Salome, Hesseling, Anneke C, Naidoo, Pren and Loveday, Marian (2021) Health system determinants of tuberculosis mortality in South Africa: a causal loop model. BMC Health Services Research, 21 (1):388. ISSN 1472-6963 (Online) (doi:https://doi.org/10.1186/s12913-021-06398-0)

Cell biology

cellular receptor

Dye, Charlotte, Temperton, Nigel ORCID: 0000-0002-7978-3815 and Siddell, Stuart G. (2007) Type I feline coronavirus spike glycoprotein fails to recognize aminopeptidase N as a functional receptor on feline cell lines. Journal of General Virology, 88 (6). pp. 1753-1760. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:https://doi.org/10.1099/vir.0.82666-0)

cereal aphids

change point

He, Sha, Yan, Dingding, Shu, Hongying, Tang, Sanyi, Wang, Xia and Cheke, Robert ORCID: 0000-0002-7437-1934 (2023) Randomness accelerates the dynamic clearing process of the COVID-19 outbreaks in China. Mathematical Biosciences, 363:109055. ISSN 0025-5564 (Print), 1879-3134 (Online) (doi:https://doi.org/10.1016/j.mbs.2023.109055)

children

China

Tang, Sanyi, Wang, Xia, Tang, Biao, He, Sha, Huang, Chenxi, Shao, Yiming, Xiao, Yanni and Cheke, Robert ORCID: 0000-0002-7437-1934 (2023) Threshold conditions for curbing COVID‑19 with a dynamic zero‑case policy derived from 101 outbreaks in China. BMC Public Health, 23:1084. pp. 1-12. ISSN 1471-2458 (doi:https://doi.org/10.1186/s12889-023-16009-8)

ChIP

Juříčková, Iva, Hudec, Michael, Votava, Felix, Vosáhlo, Jan, Ovsepian, Saak, Černá, Marie and O'Leary, Valerie (2022) The immunological epigenetic landscape of the human life trajectory. Biomedicines, 10 (11):2894. ISSN 2227-9059 (Online) (doi:https://doi.org/10.3390/biomedicines10112894)

chronic disease

Vaughan, Megan and Adjaye-Gbewonyo, Kafui ORCID: 0000-0002-8919-6518 (2021) Introduction. In: Vaughan, Megan, Adjaye-Gbewonyo, Kafui ORCID: 0000-0002-8919-6518 and Mika, Marissa, (eds.) Epidemiological Change and Chronic Disease in Sub-Saharan Africa: Social and historical perspectives. UCL Press, London, UK, pp. 1-38. ISBN 978-1787357068; 978-1787357051; 978-1787357044; 978-1787357075; 978-1787357082 (doi:https://doi.org/10.14324/111.9781787357044)

chronic pain

co-infection

GC, Sulochan, Khanal, Ashok, GC, Vijay S, Bhattrai, Suman, Panthee, Suresh, Khanal, Aashis, Gaire, Amrit, Poudel, Sagar, Ghimire, Rakesh and Wasti, Sharada Prasad ORCID: 0000-0001-8833-7801 (2022) Burden of tuberculosis and hepatitis co-infection among people living with HIV in Nepal: a systematic review and meta-analysis. Sexual Health, 19 (5). pp. 406-416. ISSN 1448-5028 (Print), 1449-8987 (Online) (doi:https://doi.org/10.1071/SH21216)

Tugume, Arthur, Mbanzibwa, Deusdedith R, Alicai, Titus, Omongo, Christopher and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2023) Endemism and reemergence potential of the ipomovirus Sweet potato mild mottle virus (family Potyviridae) in Eastern Africa: half a century of mystery. Phytobiomes Journal, 7 (1). pp. 5-28. ISSN 2471-2906 (Online) (doi:https://doi.org/10.1094/PBIOMES-05-22-0031-RVW)

community engagement

Myburgh, H., Kaur, M., Kaur, P., Santos, V., Almeida, C., Hoddinott, G., Wademan, D. T., Lakshmi, P. V. M., Osman, Muhammad ORCID: 0000-0003-3818-9729 , Meehan, S-A., Hesseling, A. C., Purty, A., Singh, U. B. and Trajman, A. (2023) Lessons for TB from the COVID-19 response: qualitative data from Brazil, India and South Africa. Public Health Action, 13 (4):7. pp. 162-168. ISSN 2220-8372 (Online) (doi:https://doi.org/10.5588/pha.23.0044)

competitive advantage

Xia, Fan, Yang, Xinpei, Cheke, Robert A. ORCID: 0000-0002-7437-1934 and Xiao, Yanni (2021) Quantifying competitive advantages of mutant strains in a population involving importation and mass vaccination rollout. Infectious Disease Modelling, 6. pp. 988-996. ISSN 2468-0427 (doi:https://doi.org/10.1016/j.idm.2021.08.001)

coronavirus disease 2019

Tseng, Ping‐Tao ORCID: 0000-0001-5761-7800 , Zeng, Bing‐Syuan, Thompson, Trevor ORCID: 0000-0001-9880-782X , Stubbs, Brendon, Hsueh, Po‐Ren, Su, Kuan‐Pin ORCID: 0000-0002-4501-2502 , Chen, Yen‐Wen, Chen, Tien‐Yu, Wu, Yi‐Cheng, Lin, Pao‐Yen, Carvalho, Andre F., Hsu, Chih‐Wei ORCID: 0000-0002-8650-4060 , Li, Dian‐Jeng, Yeh, Ta‐Chuan, Sun, Cheuk‐Kwan, Cheng, Yu‐Shian, Shiue, Yow‐Ling, Liang, Chih‐Sung ORCID: 0000-0003-1138-5586 and Tu, Yu‐Kang ORCID: 0000-0002-2461-474X (2023) Placebo effects on all‐cause mortality of patients with COVID‐19 in randomized controlled trials of interleukin 6 antagonists: a systematic review and network meta‐analysis. Psychiatry and Clinical Neurosciences (PCN). ISSN 1323-1316 (Print), 1440-1819 (Online) (doi:https://doi.org/10.1111/pcn.13592)

coronavirus disease-2019

covid

Ibrahim Elmi, Zakaria Ali, Sighakoli, Sameer, Tetteh, John and Zand Fard, Nazanin ORCID: 0000-0003-2058-2354 (2023) Case–control study of serum vitamin D concentrations in hospitalised patients with COVID-19 and hospitalised controls suffering with respiratory tract infections of differing aetiology. BMJ, Nutrition, Prevention and Health:e000428. pp. 1-7. ISSN 2516-5542 (Online) (doi:https://doi.org/10.1136/bmjnph-2022-000428)

COVID-19

Davis, Jessica, Chinazzi, Matteo, Perra, Nicola ORCID: 0000-0002-5559-3064 , Mu, Kunpeng, Pastore Y Piontti, Ana, Ajelli, Marco, Dean, Natalie, Gioannini, Corrado, Litvinova, Maria, Merler, Stefano, Rossi, Luca, Sun, Kaiyuan, Xiong, Xinyue, Longini, Ira Jr, Halloran, M. Elizabeth, Viboud, Cécile and Vespignani, Alessandro (2021) Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave. Nature. ISSN 0028-0836 (Print), 1476-4687 (Online) (doi:https://doi.org/10.1038/s41586-021-04130-w)

Ojo, Omorogieva ORCID: 0000-0003-0071-3652 , Ojo, Osarhumwese, Feng, Qianqian, Boateng, Joshua ORCID: 0000-0002-6310-729X , Wang, Xiaohua, Brooke, Joanne and Adegboye, Amanda ORCID: 0000-0003-2780-0350 (2022) The Effects of enteral nutrition in critically ill patients with COVID-19: a systematic review and meta-analysis. Nutrients, 14 (5):1120. ISSN 2072-6643 (Online) (doi:https://doi.org/10.3390/nu14051120)

Salanti, Georgia ORCID: 0000-0002-3830-8508 , Peter, Natalie ORCID: 0000-0002-5058-3270 , Tonia, Thomy ORCID: 0000-0001-7896-6188 , Holloway, Alexander ORCID: 0000-0003-0917-7235 , White, Ian R. ORCID: 0000-0002-6718-7661 , Darwish, Leila, Low, Nicola ORCID: 0000-0003-4817-8986 , Egger, Matthias ORCID: 0000-0001-7462-5132 , Haas, Andreas D. ORCID: 0000-0002-4849-181X , Fazel, Seena ORCID: 0000-0002-5383-5365 , Kessler, Ronald C. ORCID: 0000-0003-4831-2305 , Herrman, Helen ORCID: 0000-0003-3064-1813 , Kieling, Christian ORCID: 0000-0001-7691-4149 , De Quervain, Dominique J.F. ORCID: 0000-0001-7131-2464 , Vigod, Simone N. ORCID: 0000-0002-2736-9639 , Patel, Vikram, Li, Tianjing, Cuijpers, Pim ORCID: 0000-0001-5497-2743 , Cipriani, Andrea ORCID: 0000-0001-5179-8321 , Furukawa, Toshi A. ORCID: 0000-0003-2159-3776 , Leucht, Stefan ORCID: 0000-0002-4934-4352 , Sambo, Abdulkadir Usman, Onishi, Akira, Sato, Akira, Rodolico, Alessandro, Oliveira Solis, Ana Cristina de, Antoniou, Anastasia, Kapfhammer, Angelika, Ceraso, Anna, O’Mahony, Aoife, Lasserre, Aurélie M., Ipekci, Aziz Mert, Concerto, Carmen, Zangani, Caroline, Igwesi-Chidobe, Chinonso, Diehm, Christina, Demir, Dicle Dilay, Wang, Dongfang, Ostinelli, Edoardo Giuseppe, Sahker, Ethan, Beraldi, Gabriel Henrique, Erzin, Gamze, Nelson, Harrison, Elkis, Helio, Imai, Hissei, Wu, Hui, Kamitsis, Ilias, Filis, Ioannis, Michopoulos, Ioannis, Bighelli, Irene, Hong, James S.W., Ballesteros, Javier, Smith, Katharine A., Yoshida, Kazufumi, Omae, Kenji, Trivella, Marialena, Tada, Masafumi, Reinhard, Matthias A., Ostacher, Michael J., Müller, Monika, Jaramillo, Nathalia Gonzalez, Ferentinos, Panagiotis P., Toyomoto, Rie, Cortese, Samuele, Kishimoto, Sanae, Covarrubias-Castillo, Sergio A., Siafis, Spyridon, Thompson, Trevor, Karageorgiou, Vasilios, Chiocchia, Virginia, Zhu, Yikang, Honda, Yukiko, Sambo, Abdulkadir Usman, Onishi, Akira, Sato, Akira, Rodolico, Alessandro, Oliveira Solis, Ana Cristina de, Antoniou, Anastasia, Kapfhammer, Angelika, Ceraso, Anna, O’Mahony, Aoife, Lasserre, Aurélie M., Ipekci, Aziz Mert, Concerto, Carmen, Zangani, Caroline, Igwesi-Chidobe, Chinonso, Diehm, Christina, Demir, Dicle Dilay, Wang, Dongfang, Ostinelli, Edoardo Giuseppe, Sahker, Ethan, Beraldi, Gabriel Henrique, Erzin, Gamze, Nelson, Harrison, Elkis, Helio, Imai, Hissei, Wu, Hui, Kamitsis, Ilias, Filis, Ioannis, Michopoulos, Ioannis, Bighelli, Irene, Hong, James S.W., Ballesteros, Javier, Smith, Katharine A., Yoshida, Kazufumi, Omae, Kenji, Trivella, Marialena, Tada, Masafumi, Reinhard, Matthias A., Ostacher, Michael J., Müller, Monika, Jaramillo, Nathalia Gonzalez, Ferentinos, Panagiotis P., Toyomoto, Rie, Cortese, Samuele, Kishimoto, Sanae, Covarrubias-Castillo, Sergio A., Siafis, Spyridon, Thompson, Trevor ORCID: 0000-0001-9880-782X , Karageorgiou, Vasilios, Chiocchia, Virginia, Zhu, Yikang and Honda, Yukiko (2022) The impact of the COVID-19 pandemic and associated control measures on the mental health of the general population. Annals of Internal Medicine, 175 (11). pp. 1560-1571. ISSN 0003-4819 (Print), 1539-3704 (Online) (doi:https://doi.org/10.7326/M22-1507)

Simkhada, Padam, Tamang, Pasang D ORCID: 0000-0003-2733-7239 , Timilsina, Laxmi, Simkhada, Bibha, Bissell, Paul, van Teijlingen, Edwin, Sah, Sunil Kumar and Wasti, Sharada Prasad ORCID: 0000-0001-8833-7801 (2022) Factors influencing COVID-19 vaccine uptake among Nepali people in the UK: a qualitative study. Vaccines, 10 (5):780. pp. 1-16. ISSN 2076-393X (Online) (doi:https://doi.org/10.3390/vaccines10050780)

Wasti, Sharada Prasad ORCID: 0000-0001-8833-7801 , Simkhada, Padam, Ale Magar, Sudip and van Teijlingen, Edwin (2021) Nepalese health system response to fight against COVID-19 pandemic. Europasian Journal of Medical Sciences, 3 (1). pp. 98-104. ISSN 2717-4646 (Print), 2717-4654 (Online) (doi:https://doi.org/10.46405/ejms.v3i1.262)

Xiao, Yanni, Tang, Biao, Wu, Jianhong, Cheke, Robert ORCID: 0000-0002-7437-1934 and Tang, Sanyi (2020) Linking key intervention timings to rapid decline of the COVID-19 effective reproductive number to quantify lessons from mainland China. International Journal of Infectious Diseases, 97. pp. 296-298. ISSN 1201-9712 (Print), 1878-3511 (Online) (doi:https://doi.org/10.1016/j.ijid.2020.06.030)

Yu, Chia-Ling, Carvalho, Andre F., Thompson, Trevor ORCID: 0000-0001-9880-782X , Tsai, Tzu-Cheng, Tseng, Ping-Tao ORCID: 0000-0001-5761-7800 , Hsu, Chih-Wei ORCID: 0000-0002-8650-4060 , Tu, Yu-Kang ORCID: 0000-0002-2461-474X , Yang, Szu-Nian ORCID: 0000-0002-6091-0263 , Hsu, Tien-Wei ORCID: 0000-0003-4136-1251 , Yeh, Ta-Chuan and Liang, Chih-Sung ORCID: 0000-0003-1138-5586 (2023) Trial sequential analysis and updated meta-analysis of fluvoxamine on clinical deterioration in adult patients with symptomatic COVID-19 infection. International Journal of Environmental Research and Public Health, 20 (5):4088. pp. 1-13. ISSN 1660-4601 (Online) (doi:https://doi.org/10.3390/ijerph20054088)

COVID-19 and tuberculosis

Loveday, M, Cox, H, Evans, D, Furin, J, Ndjeka, N, Osman, Muhammad ORCID: 0000-0003-3818-9729 and Naidoo, K (2020) Opportunities from a new disease for an old threat: extending COVID-19 efforts to address tuberculosis in South Africa. South African Medical Journal, 110 (12). pp. 1160-1167. ISSN 0256-9574 (Print), 2078-5135 (Online) (doi:https://doi.org/10.7196/SAMJ.2020.v110i12.15126)

COVID-19 lockdown

critical coverage rate

Cytochrome oxidase

Côte d'Ivoire

Kamara, Adjata, Camara, Brahima, Armitage, Andrew ORCID: 0000-0002-0610-763X , Ogunsanya, Olaide, Gouannou, Vartinel and Koné, Daouda (2024) First report of penicillium sclerotigenum causing post-harvest rot of yam in Côte d'Ivoire. New Disease Reports, 50 (1):e12307. ISSN 2044-0588 (doi:https://doi.org/10.1002/ndr2.12307)

data fitting

days on mechanical ventilation

death

delayed enteral nutrition

denaturing gradient gel electrophoresis (DGGE)

dengue

deterioration

dioscorea

Dioscorea spp.

disability-adjusted life years

disease

disease resistance

diversity

dna

dna viruses

dolichos yellow mosaic disease

Maruthi, M.N ORCID: 0000-0002-8060-866X , Rekha, A.R., Govindappa, M.R., Colvin, John and Muniyappa, V. (2006) A distinct begomovirus causes Indian dolichos yellow mosaic disease. Plant Pathology, 55 (2). p. 290. ISSN 0032-0862 (doi:https://doi.org/10.1111/j.1365-3059.2005.01299.x)

drug resistance

drug-resistant tuberculosis

Hughe, J. and Osman, Muhammad ORCID: 0000-0003-3818-9729 (2014) Diagnosis and management of drug-resistant tuberculosis in South African adults. South African Medical Journal, 104 (12). p. 894. ISSN 0256-9574 (Print), 2078-5135 (Online) (doi:https://doi.org/10.7196/SAMJ.9097)

Khan, Palwasha Y, Yates, Tom A, Osman, Muhammad ORCID: 0000-0003-3818-9729 , Warren, Robin M, van der Heijden, Yuri, Padayatchi, Nesri, Nardell, Edward A, Moore, David, Mathema, Barun, Gandhi, Neel, Eldholm, Vegard, Dheda, Keertan, Hesseling, Anneke C, Mizrahi, Valerie, Rustomjee, Roxana and Pym, Alexander (2018) Transmission of drug-resistant tuberculosis in HIV-endemic settings. The Lancet Infectious Diseases, 19 (3). e77-e88. ISSN 1473-3099 (Print), 1474-4457 (Online) (doi:https://doi.org/10.1016/S1473-3099(18)30537-1)

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Harausz, Elizabeth P., Garcia-Prats, Anthony J., Schaaf, H. Simon, Moore, Brittany K., Hicks, Robert M., Achar, Jay, Amanullah, Farhana, Barry, Pennan, Becerra, Mercedes, Chiotan, Domnica I., Drobac, Peter C., Flood, Jennifer, Furin, Jennifer, Gegia, Medea, Isaakidis, Petros, Mariandyshev, Andrei, Ozere, Iveta, Shah, N. Sarita, Skrahina, Alena, Yablokova, Elena, Seddon, James A. and Hesseling, Anneke C. (2019) Treatment outcomes in global systematic review and patient meta-analysis of children with extensively drug-resistant tuberculosis. Emerging Infectious Diseases, 25 (3). pp. 441-450. ISSN 1080-6040 (Print), 1080-6059 (Online) (doi:https://doi.org/10.3201/eid2503.180852)

Seddon, James A. ORCID: 0000-0002-2296-2302 , Garcia-Prats, Anthony J., Purchase, Susan E., Osman, Muhammad ORCID: 0000-0003-3818-9729 , Demers, Anne-Marie, Hoddinott, Graeme, Crook, Angela M., Owen-Powell, Ellen, Thomason, Margaret J., Turkova, Anna, Gibb, Diana M., Fairlie, Lee, Martinson, Neil, Schaaf, H. Simon and Hesseling, Anneke C. (2018) Levofloxacin versus placebo for the prevention of tuberculosis disease in child contacts of multidrug-resistant tuberculosis: study protocol for a phase III cluster randomised controlled trial (TB-CHAMP). Trials, 19 (1):693. ISSN 1745-6215 (Online) (doi:https://doi.org/10.1186/s13063-018-3070-0)

dying

E coli

Hassell, James M. ORCID: 0000-0002-4710-2827 , Muloi, Dishon M., VanderWaal, Kimberly L. ORCID: 0000-0002-5764-6430 , Ward, Melissa J., Bettridge, Judy ORCID: 0000-0002-3917-4660 , Gitahi, Nduhiu ORCID: 0000-0001-6302-5908 , Ouko, Tom, Imboma, Titus, Akoko, James, Karani, Maurice ORCID: 0000-0001-6467-4352 , Muinde, Patrick ORCID: 0000-0003-3907-7710 , Nakamura, Yukiko ORCID: 0000-0002-3379-0526 , Alumasa, Lorren ORCID: 0000-0002-1723-0510 , Furmaga, Erin, Kaitho, Titus, Amanya, Fredrick, Ogendo, Allan, Fava, Francesco ORCID: 0000-0003-3748-7417 , Wee, Bryan A., Phan, Hang, Kiiru, John, Kang’ethe, Erastus, Kariuki, Sam ORCID: 0000-0003-3209-9503 , Robinson, Timothy, Begon, Michael ORCID: 0000-0003-1715-5327 , Woolhouse, Mark E. J. and Fèvre, Eric M. ORCID: 0000-0001-8931-4986 (2023) Epidemiological connectivity between humans and animals across an urban landscape. Proceedings of the National Academy of Sciences, 120 (29):e2218860120. pp. 1-12. ISSN 0027-8424 (Print), 1091-6490 (Online) (doi:https://doi.org/10.1073/pnas.2218860120)

E. coli

early enteral nutrition

early virus detection

East African cassava mosaic virus

Eastern Africa

effective reproductive number

ELISA

emerging infectious disease

Dogra, Alma Elina Kaur, Munyasa, Winnan Lucia, Nguyen-Viet, Hung and Grace, Delia ORCID: 0000-0002-0195-9489 (2023) Looking in all the wrong places: a rationale for signal detection for pandemics based on existing data sources. IJID One Health:100003. ISSN 2949-9151 (doi:https://doi.org/10.1016/j.ijidoh.2023.100003)

Endocytosis

endogenous badnaviral elements

endogenous retrovirus

enteral nutrition

environmental conditions

Stettler, Marc E. J., Nishida, Robert T., de Oliveira, Pedro M., Mesquita, Léo C. C., Johnson, Tyler J., Galea, Edwin ORCID: 0000-0002-0001-6665 , Grandison, Angus, Ewer, John ORCID: 0000-0003-0609-272X , Carruthers-Jones, David, Sykes, David, Kumar, Prashant, Avital, Eldad, Obeysekara, Asiri I. B., Doorly, Denis, Hardalupas, Yannis, Green, David C., Coldrick, Simon, Parker, Simon and Boies, Adam M. (2022) Source terms for benchmarking models of SARS-CoV-2 transmission via aerosols and droplets. Royal Society Open Science, 9 (5):212022. ISSN 2054-5703 (Online) (doi:https://doi.org/10.1098/rsos.212022)

epidemic waves

epidemiology

expression

facilitator

facilitators

feline aminopeptidase N

flower strips

fluvoxamine

food security

gastrointestinal intolerance

Geminiviridae

geminivirus

Geminivirus diversity

gene expression

genome

genomic typing

Bettridge, Judy ORCID: 0000-0002-3917-4660 , Snow, L. C., Tang, Y., Petrovska, L. ORCID: 0000-0003-2638-5052 , Lawes, J. and Smith, R. P. ORCID: 0000-0001-6871-4673 (2023) Using SNP addresses for Salmonella Typhimurium DT104 in routine veterinary outbreak detection. Epidemiology and Infection, 151:e187. pp. 1-14. ISSN 0950-2688 (Print), 1469-4409 (Online) (doi:https://doi.org/10.1017/S0950268823001723)

genomics

genotype

Sharaf, Abdoallah, Nuc, Przemysław, Ripl, Jan, Alquicer, Glenda, Ibrahim, Emad, Wang, Xifeng, Maruthi, M.N. ORCID: 0000-0002-8060-866X and Kundu, Jiban Kumar (2023) Transcriptome dynamics in triticum aestivum genotypes associated with resistance against the wheat dwarf virus. Viruses, 15:689. pp. 1-20. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15030689)

genotype environment interaction

Ghana

Lamberton, Poppy H.L., Cheke, Robert A. ORCID: 0000-0002-7437-1934 , Winskill, Peter, Tirados, Iñaki, Walker, Martin, Osei-Atweneboana, Mike Y., Biritwum, Nana-Kwadwo, Tetteh-Kumah, Anthony, Boakye, Daniel A., Wilson, Michael D., Post, Rory J. and Basañez, María-Gloria (2015) Onchocerciasis transmission in Ghana: Persistence under different control strategies and the role of the simuliid vectors. PLOS Neglected Tropical Diseases, 9 (4):e0003688. pp. 1-27. ISSN 1935-2727 (Print), 1935-2735 (Online) (doi:https://doi.org/10.1371/journal.pntd.0003688)

glycated haemoglobin

H5N1

Temperton, Nigel J. ORCID: 0000-0002-7978-3815 , Hoschler, Katja, Major, Diane, Nicolson, Carolyn, Manvell, Ruth, Hien, Vo Minh, Ha, Do Quang, de Jong, Menno, Zambon, Maria, Takeuchi, Yasuhiro and Weiss, Robin A. (2007) A sensitive retroviral pseudotype assay for influenza H5N1-neutralizing antibodies. Influenza and other respiratory viruses, 1 (3). pp. 105-112. ISSN 1750-2659 (online) (doi:https://doi.org/10.1111/j.1750-2659.2007.00016.x)

health

health system

health systems

helper component protease

helper virus

hepatitis

HERV

high yield

histone

HIV

HIV ⁄ AIDS

HIV-TB

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Seddon, James A., Dunbar, Rory, Draper, Heather R., Lombard, Carl and Beyers, Nulda (2015) The complex relationship between human immunodeficiency virus infection and death in adults being treated for tuberculosis in Cape Town, South Africa. BMC Public Health, 15 (1):556. ISSN 1471-2458 (Online) (doi:https://doi.org/10.1186/s12889-015-1914-z)

HIV/AIDS

HLA

horticulture

Host choice

Lamberton, Poppy H. L., Cheke, Robert A. ORCID: 0000-0002-7437-1934 , Walker, Martin, Winskill, Peter, Crainey, J. Lee, Boakye, Daniel A., Osei-Atweneboana, Mike Y., Tirados, Iñaki, Wilson, Michael D., Tetteh-Kumah, Anthony, Otoo, Sampson, Post, Rory J. and Basañez, María-Gloria (2016) Onchocerciasis transmission in Ghana: the human blood index of sibling species of the Simulium damnosum complex. Parasites & Vectors, 9 (1). ISSN 1756-3305 (Print), 1756-3305 (Online) (doi:https://doi.org/10.1186/s13071-016-1703-2)

host decoy trap

Host-seeking vectors

HTS

Human blood index

I gene

immunity

Temperton, Nigel J. ORCID: 0000-0002-7978-3815 , Chan, Paul K., Simmons, Graham, Zambon, Maria C., Tedder, Richard S., Takeuchi, Yasuhiro and Weiss, Robin A. (2005) Longitudinally profiling neutralizing antibody response to SARS coronavirus with pseudotypes. Emerging Infectious Diseases, 11 (3). pp. 411-416. ISSN 1080-6059 (doi:https://doi.org/10.3201/eid1103.040906)

immunity waning

Indian Jatropha Mosaic Disease

Indian subcontinent

Durrance-Bagale, Anna, Rudge, James W., Singh, Nanda Bahadur, Belmain, Steven R. ORCID: 0000-0002-5590-7545 and Howard, Natasha (2021) Drivers of zoonotic disease risk in the Indian subcontinent: a scoping review. One Health, 13:100310. ISSN 2352-7714 (doi:https://doi.org/10.1016/j.onehlt.2021.100310)

infection

infectious disease

influenza

influenza-like illness (ILI)

interferon (IFN)-inducible transmembrane (IFITM) protein

Dowran, Razieh, Nabavi, Seyed Fazel, Habtemariam, Solomon, Banach, Maciej, Shahmohamadnejad, Shiva, Cismaru, Cosmin Andrei, Berindan-Neagoe, Ioana, Sahebnasagh, Adeleh and Nabavi, Seyed Mohammad (2020) Various interferon (IFN)-inducible transmembrane (IFITM) proteins for COVID-19, is there a role for the combination of mycophenolic acid and interferon? Biochimie, 177. pp. 50-52. ISSN 0300-9084 (doi:https://doi.org/10.1016/j.biochi.2020.08.006)

interleukin

intervention timing

IPM

Ipomovirus

isothermal amplification

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

legume

Leishmania

Hall, Martin J. R., Ghosh, Debashi, Martin-Vega, Daniel, Clark, Brett, Clatworthy, Innes, Cheke, Robert A. ORCID: 0000-0002-7437-1934 and Rogers, Matthew E. (2021) Micro-CT visualization of a promastigote secretory gel (PSG) and parasite plug in the digestive tract of the sand fly Lutzomyia longipalpis infected with Leishmania mexicana. PLoS Neglected Tropical Diseases, 15 (8):e0009682. pp. 1-17. ISSN 1935-2735 (Print), 1935-2727 (Online) (doi:https://doi.org/10.1371/journal.pntd.0009682)

length of hospital stay

Leptospirosis

linkage to care

Vanqa, Nosivuyile, Hoddinott, Graeme, Mbenyana, Baxolele, Osman, Muhammad ORCID: 0000-0003-3818-9729 and Meehan, Sue-Ann (2021) Linkage to TB care: a qualitative study to understand linkage from the patients' perspective in the Western Cape Province, South Africa. PloS one, 16 (11):e0260200. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0260200)

Viljoen, L., Hendricks, P., Hoddinott, G., Vanqa, N., Osman, Muhammad ORCID: 0000-0003-3818-9729 , Hesseling, A. C. and Meehan, S-A. (2022) Early interactions with newly diagnosed TB patients in hospital can support linkage to care. Public Health Action, 12 (3):7. pp. 121-127. ISSN 2220-8372 (Online) (doi:https://doi.org/10.5588/pha.22.0012)

lipid parameters

live SARS virus

lockdown

long non-coding RNA

malaria vectors

mathematical model

mathematical modelling

Dodd, Peter J. ORCID: 0000-0001-5825-9347 , Osman, Muhammad ORCID: 0000-0003-3818-9729 , Cresswell, Fiona V. ORCID: 0000-0002-5070-532X , Stadelman, Anna M., Lan, Nguyen Huu, Thuong, Nguyen Thuy Thuong ORCID: 0000-0001-8733-692X , Muzyamba, Morris ORCID: 0000-0001-8442-4481 , Glaser, Lisa ORCID: 0000-0002-8715-9799 , Dlamini, Sicelo S. and Seddon, James A. ORCID: 0000-0002-2296-2302 (2021) The global burden of tuberculous meningitis in adults: a modelling study. PLOS Global Public Health, 1 (12):e0000069. ISSN 2767-3375 (Online) (doi:https://doi.org/10.1371/journal.pgph.0000069)

mean first passage time

medications

Hushmandi, Kiavash, Bokaie, Saied, Hashemi, Mehrdad, Moghadam, Ebrahim Rahmani, Raei, Mehdi, Hashemi, Farid, Bagheri, Mahdi, Habtemariam, Solomon and Nabavi, Seyed Mohammad (2020) A review of medications used to control and improve the signs and symptoms of COVID-19 patients. European Journal of Pharmacology, 887:173568. ISSN 0014-2999 (Print), 1879-0712 (Online) (doi:https://doi.org/10.1016/j.ejphar.2020.173568)

mental health

meta-analysis

methylation

migratory pest

mitigation

mixed infections

mixed-methods

mobile genetic elements

model

modeling

molecular epidemiology

molecular genetics

mortality

Osman, Muhammad ORCID: 0000-0003-3818-9729 , du Preez, Karen, Seddon, James A., Claassens, Mareli M., Dunbar, Rory, Dlamini, Sicelo S., Welte, Alex, Naidoo, Pren and Hesseling, Anneke C. (2021) Mortality in South African children and adolescents routinely treated for tuberculosis. Pediatrics, 147 (4):e2020032490. ISSN 0031-4005 (Print), 1098-4275 (Online) (doi:https://doi.org/10.1542/peds.2020-032490)

mosaic-virus

mosquito larvae

Vaux, AGC, Abbott, Anthony, Johnston, CJ, Hawkes, Frances ORCID: 0000-0002-0964-3702 , Hopkins, Richard ORCID: 0000-0003-4935-5825 , Cull, B, Gibson, Gabriella, Cheke, Robert ORCID: 0000-0002-7437-1934 , Callaghan, A and Medlock, JM (2024) An update on the ecology, seasonality and distribution of Culex modestus in England. Journal of the European Mosquito Control Association, 2023. pp. 1-19. ISSN 2054-930X (Online) (doi:https://doi.org/10.52004/JEMCA20231003)

mosquito trap

multiple sclerosis

multiplex PCR

natural enemies

neglected zoonotic diseases

Nepal

Nepali community

network meta-analysis

neuraminidase inhibitor

neutralizing titers

newly reported cases

next-generation sequencing

Nipah virus

non-pharmaceutical interventions

non-suppression

Non-viral

novel corona virus

nucleopolyhedrovirus

nucleotide-sequence

obstruction

Allwood, B. W., Stolbrink, M., Baines, N., Louw, E., Wademan, D. T., Lupton-Smith, A., Nel, S., Maree, D., Mpagama, S., Osman, Muhammad ORCID: 0000-0003-3818-9729 , Marx, F. M., Hoddinott, G., Lesosky, M., Rylance, J. and Mortimer, K. (2021) Persistent chronic respiratory symptoms despite TB cure is poorly correlated with lung function. The International Journal of Tuberculosis and Lung Disease, 25 (4):9. pp. 262-270. ISSN 1027-3719 (Print), 1815-7920 (Online) (doi:https://doi.org/10.5588/ijtld.20.0906)

odds ratios

older people

Onchocerca volvulus

Onchocerciasis

One Health

Ovipositing vectors

paediatric tuberculosis

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Lee, Kevin, Du Preez, Karen, Dunbar, Rory, Hesseling, Anneke C and Seddon, James A (2017) Excellent treatment outcomes in children treated for tuberculosis under routine operational conditions in Cape Town, South Africa. Clinical Infectious Diseases, 65 (9). pp. 1444-1452. ISSN 1058-4838 (Print), 1537-6591 (Online) (doi:https://doi.org/10.1093/cid/cix602)

Seddon, James A, Whittaker, Elizabeth, Kampmann, Beate, Lewinsohn, Deborah A, Osman, Muhammad ORCID: 0000-0003-3818-9729 , Hesseling, Anneke C, Rustomjee, Roxana and Amanullah, Farhana (2018) The evolving research agenda for paediatric tuberculosis infection. The Lancet Infectious Diseases, 19 (9). e322-e329. ISSN 1473-3099 (Print), 1474-4457 (Online) (doi:https://doi.org/10.1016/S1473-3099(18)30787-4)

pandemic

pandemic preparedness

parasite plug

parenteral nutrition

PARTICLE

PASET

patient engagement

patients' perspective

PEG-dilemma

penicillium

phylogenetics

phylogeography

physiology

placebo effect

plant disease

plant pathogenic virus

Kubiriba, Jerome (2005) Epidemiology of Banana streak virus (BSV) in East African highland bananas (AAA-EA). PhD thesis, University of Greenwich.

political will

Myburgh, H., Meehan, S-A., Wademan, D. T., Osman, Muhammad ORCID: 0000-0003-3818-9729 , Hesseling, A. C. and Hoddinott, G. (2023) TB programme stakeholder views on lessons from the COVID-19 response in South Africa. Public Health Action, 13 (3):7. pp. 97-103. ISSN 2220-8372 (Online) (doi:https://doi.org/10.5588/pha.23.0015)

population genetics

post harvest

post-TB

post-tuberculosis

Louw, Eh ORCID: 0000-0003-4385-2249 , Baines, N, Maarman, G, Osman, Muhammad ORCID: 0000-0003-3818-9729 , Sigwadhi, Ln, Irusen, Em, Koegelenberg, Cfn, Doubell, Af, Nathan, Sd, Channick, R and Allwood, Bw (2023) The prevalence of pulmonary hypertension after successful tuberculosis treatment in a community sample of adult patients. Pulmonary Circulation, 13 (1):e12184. pp. 1-13. ISSN 2045-8940 (Online) (doi:https://doi.org/10.1002/pul2.12184)

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Welte, Alex, Dunbar, Rory, Brown, Rosemary, Hoddinott, Graeme, Hesseling, Anneke C. and Marx, Florian M. (2019) Morbidity and mortality up to 5 years post tuberculosis treatment in South Africa: a pilot study. International Journal of Infectious Diseases, 85. pp. 57-63. ISSN 1201-9712 (doi:https://doi.org/10.1016/j.ijid.2019.05.024)

posthuman

poverty

Grace, Delia ORCID: 0000-0002-0195-9489 and Cook, Elizabeth (2023) The multiple burdens of zoonoses in low- and middle-income countries: why zoonoses are worse for the poor. In: Singer, Andreas, (ed.) Zoonoses: Infections affecting humans and animals. Springer Nature Switzerland AG, Cham, pp. 1-13. ISBN 978-3030858773 (doi:https://doi.org/10.1007/978-3-030-85877-3_46-1)

prevalence

production constraints

programmatic implementation

programmatic management

programmatic tuberculosis management

promastigote

pseudotype assay

pseudotype virus

pseudotypes

public health

public health changes

Osman, Muhammad ORCID: 0000-0003-3818-9729 , du Preez, K., Naidoo, P., Bock, P., Rabie, H., Dlamini, S. S. and Hesseling, A. C. (2020) Key changes in the public health response to TB and HIV in South Africa. The International Journal of Tuberculosis and Lung Disease, 24 (8). pp. 857-859. ISSN 1027-3719 (Print), 1815-7920 (Online) (doi:https://doi.org/10.5588/ijtld.20.0147)

pulmonary hypertension

PYMV

qualitative research

Rabies

rainfall

rapid diagnosis

rate ratios

recovery

relative measures

remote healthcare

reproduction number

resistance

respiratory syndrome coronavirus (MERS-CoV)

restriction

retrotransposable elements

retroviral pseudotypes

Reverse transcriptase recombinase polymerase amplification (RT-RPA)

rice

risk factors

Nicholson, Tamaryn J, Hoddinott, Graeme, Seddon, James A, Claassens, Mareli M, van der Zalm, Marieke M, Lopez, Elisa, Bock, Peter, Caldwell, Judy, Da Costa, Dawood, de Vaal, Celeste, Dunbar, Rory, Du Preez, Karen, Hesseling, Anneke C, Joseph, Kay, Kriel, Ebrahim, Loveday, Marian, Marx, Florian M, Meehan, Sue-Ann, Purchase, Susan, Naidoo, Kogieleum, Naidoo, Lenny, Solomon-Da Costa, Fadelah, Sloot, Rosa and Osman, Muhammad ORCID: 0000-0003-3818-9729 (2023) A systematic review of risk factors for mortality among tuberculosis patients in South Africa. Systematic Reviews, 12 (23). pp. 1-16. ISSN 2046-4053 (Online) (doi:https://doi.org/10.1186/s13643-023-02175-8)

risk ratios

RNA-seq

RNAi

rot

routine programmatic management

routine reporting

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Welte, A, Naidoo, P, Loveday, M and Hesseling, AC (2020) Limitations and potential bias in vital registration data and tuberculosis mortality reporting in South Africa. South African Medical Journal, 110 (7). pp. 607-609. ISSN 0256-9574 (Print), 2078-5135 (Online) (doi:https://doi.org/10.7196/SAMJ.2020.v110i7.14533)

RT-LAMP

RT‐qPCR

Salmonella (Typhimurium)

sand fly

SARS-CoV-2

SARS-CoV-2 Delta variant

seasonality

secretory gel

seed systems

serology

signal detection

Simulium damnosum

Simulium damnosum (sensu lato)

siRNA

SIRV

Sjogren’s syndrome

South Africa

South Asia

species demarcation

spirometry

Spodoptera exempta

stochastic difference model

stomodeal valve

sub-Saharan Africa

Subling species

sugarcane

surveillance

sweet potato (Ipomoea batatas)

sweet potato reversion

swollen shoot virus

systematic review

TB

TB cascade

TB control

TB mortality

TB prevention

TB-HIV

Sloot, R, Maarman, G J, Osman, Muhammad ORCID: 0000-0003-3818-9729 and Marx, F M (2018) Variation in HIV prevalence and the population-level effects of antiretroviral therapy in reducing tuberculosis incidence in South Africa. South African Medical Journal, 108 (8). p. 606. ISSN 0256-9574 (Print), 2078-5135 (Online) (doi:https://doi.org/10.7196/SAMJ.2018.v108i8.13394)

tears lived with disability

technology

temperature

timeline

TINA

tomato

transcriptome

transhumanism

Transmission

treatment outcomes

trial sequential analysis

tuberculosis

tuberculosis meningitis

tuberculosis mortality

Osman, Muhammad ORCID: 0000-0003-3818-9729 , Verster, Janette, Dempers, Johan J, Du Preez, Karen, von Delft, Arne, Dunbar, Rory, Welte, Alex, Naidoo, Pren and Hesseling, Anneke C (2021) Tuberculosis in persons with sudden unexpected death, in Cape Town, South Africa. International Journal of Infectious Diseases, 105. pp. 75-82. ISSN 1201-9712 (doi:https://doi.org/10.1016/j.ijid.2021.02.036)

Osman, Muhammad ORCID: 0000-0003-3818-9729 , van Schalkwyk, Cari, Naidoo, Pren, Seddon, James A., Dunbar, Rory, Dlamini, Sicelo S., Welte, Alex, Hesseling, Anneke C. and Claassens, Mareli M. (2021) Mortality during tuberculosis treatment in South Africa using an 8-year analysis of the national tuberculosis treatment register. Scientific Reports, 11 (1):15894. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-021-95331-w)

tuberculosis outcomes

tuberculosis programmatic management

tungro-associated viruses

tungro-bacilliform virus

type 2 diabetes

type I feline coronaviruses

Uganda

United Kingdom

upper limits

urbanization

vaccination

vaccination strategy

vaccine

vaccine uptake

vaccines

vector

Vector abundance

vector transmission

vector-mediated transmission

veterinary epidemiology

viral load

viral neutralization

viral release assay

viral sequences

virus

virus detection

virus diagnostics

virus disease epidemiology

virus emergence

virus evolution

virus research

Kubiriba, Jerome (2005) Epidemiology of Banana streak virus (BSV) in East African highland bananas (AAA-EA). PhD thesis, University of Greenwich.

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