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Items where Faculty / Department / Research Groups is "Molecular Virology and Entomology Research Group"

Items where Faculty / Department / Research Groups is "Molecular Virology and Entomology Research Group"

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Number of items at this level: 105.

AB SOLiD

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Aegilops tauschii

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Arabidopsis thaliana

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

autoSNP

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

BAC

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Badna-PCR

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Badnavirus

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:https://doi.org/10.1016/j.pmpp.2018.06.003)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Betaflexiviridae

Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

Bioinformatics

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

BNG map

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

cell cycle

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

cell suspension culture

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

cell wall 25 proteins

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

Centromere

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

Cereals

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

Chromsosomes

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

closed‑tube reverse transcription loop‑mediated isothermal amplification (CT-RT-LAMP)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-018-3706-0)

COI1

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

Complete genome

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

database

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Visendi, Paul, Ng'ang'a, Wanjiku, Bulimo, Wallace, Bishop, Richard, Ochanda, James and de Villiers, Etienne P. (2011) TparvaDB: a database to support Theileria parva vaccine development. Database, 2011. bar015-bar015. ISSN 1758-0463 (Online) (doi:https://doi.org/10.1093/database/bar015)

Denaturing gradient gel electrophoresis (DGGE)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Detection

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

diagnostic assay

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-018-3706-0)

Diagnostics

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Dioscorea

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-018-3706-0)

Dioscorea rotundata

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Dioscorea spp.

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:https://doi.org/10.1016/j.pmpp.2018.06.003)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

diversity

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

DNA extraction

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Endogenous Dioscorea bacilliform virus

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Endogenous pararetrovirus

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Endogenous pararetrovirus (EPRV)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Episomal badnavirus

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Evolution

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12044)

Flow sorting

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

genome

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

genome diversity

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Genome sequencing

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12044)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

genotyping by sequencing

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

haplotype

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

HTS

Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

Illumina

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

In vitro culture

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:https://doi.org/10.1016/j.pmpp.2018.06.003)

Integration

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Ion Torrent

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

jasmonate

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

Markers

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

next-generation sequencing

Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

Next-generation sequencing – SASSY – BAC – Assembly – 7DS – Triticum aestivum – Saccharum spp

Visendi, Paul, Berkman, Paul J., Hayashi, Satomi, Golicz, Agnieszka A., Bayer, Philipp E., Ruperao, Pradeep, Hurgobin, Bhavna, Montenegro, Juan, Chan, Chon-Kit Kenneth, Staňková, Helena, Batley, Jacqueline, Šimková, Hana, Doležel, Jaroslav and Edwards, David (2016) An efficient approach to BAC based assembly of complex genomes. Plant Methods, 12 (2). pp. 1-9. ISSN 1746-4811 (Print), 1746-4811 (Online) (doi:https://doi.org/10.1186/s13007-016-0107-9)

Optical mapping

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Oxford nanopore

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Pacific biosciences

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

pangenome

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Phylogeny

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Physical Map

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Polyploidy

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

Potyvirus

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-018-3706-0)

primary metabolism

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

Recombination

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

RNA-Seq

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:https://doi.org/10.1016/j.pmpp.2018.06.003)

Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

Roche 454

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

Rolling circle amplification

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Sequence diversity

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Sequencing

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

single nucleotide polymorphisms

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2 (4). pp. 1357-1377. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology2041357)

Visendi, Paul, Batley, Jacqueline and Edwards, David (2013) Next generation sequencing and germplasm resources. Genomics of Plant Genetic Resources. Springer, Dordrecht, Holland, pp. 369-390. ISBN 978-9400775718 (doi:https://doi.org/10.1007/978-94-007-7572-5_15)

stress–signalling

Bömer, Moritz ORCID: 0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:https://doi.org/10.1093/aob/mcy109)

Sub-Saharan Africa

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Thjileria Parva

Visendi, Paul, Ng'ang'a, Wanjiku, Bulimo, Wallace, Bishop, Richard, Ochanda, James and de Villiers, Etienne P. (2011) TparvaDB: a database to support Theileria parva vaccine development. Database, 2011. bar015-bar015. ISSN 1758-0463 (Online) (doi:https://doi.org/10.1093/database/bar015)

Triticum aestivum

Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michał T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Šimková, Hana, Kubaláková, Marie, Weining, Song, Doležel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 (5). pp. 564-571. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12044)

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Tulpová, Zuzana, Luo, Ming-Cheng, Toegelová, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michaël, Bartoš, Jan, Hajdúch, Marián, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2018) Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. New Biotechnology, 48. pp. 12-19. ISSN 1871-6784 (Print), 1876-4347 (Online) (doi:https://doi.org/10.1016/j.nbt.2018.03.003)

vaccine development

Visendi, Paul, Ng'ang'a, Wanjiku, Bulimo, Wallace, Bishop, Richard, Ochanda, James and de Villiers, Etienne P. (2011) TparvaDB: a database to support Theileria parva vaccine development. Database, 2011. bar015-bar015. ISSN 1758-0463 (Online) (doi:https://doi.org/10.1093/database/bar015)

virus detection

Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:https://doi.org/10.3390/plants8060167)

West Africa

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

wheat

Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 (3). pp. 370-382. ISSN 2079-7737 (Print), 2079-7737 (Online) (doi:https://doi.org/10.3390/biology1020370)

Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Muhindira, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline and Edwards, David (2017) The pangenome of hexaploid bread wheat. The Plant Journal, 90 (5). pp. 1007-1013. ISSN 0960-7412 (doi:https://doi.org/10.1111/tpj.13515)

Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav and Šimková, Hana (2016) BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7). pp. 1523-1531. ISSN 1467-7644 (Print), 1467-7652 (Online) (doi:https://doi.org/10.1111/pbi.12513)

Yam

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: 0000-0001-5544-2947 and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-017-3605-9)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Bömer, Moritz ORCID: 0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v8070188)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-018-3706-0)

Turaki, Aliyu A., Bömer, Moritz ORCID: 0000-0003-1003-9622, Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:https://doi.org/10.3390/v9070181)

Yam mosaic virus

Bömer, Moritz ORCID: 0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: 0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:https://doi.org/10.1016/j.pmpp.2018.06.003)

YMV

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: 0000-0001-5544-2947, Bömer, Moritz ORCID: 0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-018-3706-0)

This list was generated on Fri Aug 7 16:50:01 2020 UTC.