Items where Author is "Harrison, Richard J."

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accessory genome Alternaria gaisen Alternaria mali apple canker avirulence bacterial canker basal rot biofuels biopores CDC Colletotrichum gloeosporiodes comparative genomics crinkler CRISPR/Cas9 Crown rot CTG clade yeast daffodil diploid disease complex Dothideomycete Dothideomycetes effector effector genes effectors formae speciales Fragaria fragaria x ananassa fungal barcoding Fusarium basal rot Fusarium oxysporum f. sp. cepae Fusarium oxysporum f. sp. lactucae Fusarium oxysporum f. sp. narcissi Fusarium oxysporum f. sp. pisi Fusarium wilt gene expression Genome genome plasticity genomic instability Gibberella helitron host specialization host-specific toxin host–microbe interactions lettuce mating type nanopore nanopore sequencing Narcissus nectria NGS octopoid onion oomycete pathogenicity pathotype Pea phytoene desaturase plant pathogen polyploid population resequencing prediction Pseudomonas qPCR QTL race race structure red core resource use RNA-Seq root distribution root systems root-shoot communication root-soil contact rootstock RxLR secreted in xylem secreted in xylem (SIX) section SIX genes SIX2 species complex strawberry toxins transposons type III effectors VCG wilt

Number of items: 99.

accessory genome

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

Alternaria gaisen

Armitage, Andrew ORCID: https://orcid.org/0000-0002-0610-763X, Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2019.03124)

Alternaria mali

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Barbara, Dez J., Harrison, Richard J., Lane, Charles R., Sreenivasaprasad, Surapareddy, Woodhall, James W. and Clarkson, John P. (2015) Discrete lineages within Alternaria alternata species group: identification using new highly variable loci and support from morphological characters. Fungal Biology, 119 (11). pp. 994-1006. ISSN 1878-6146 (doi:10.1016/j.funbio.2015.06.012)

apple canker

Gómez-Cortecero, Antonio, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X and Harrison, Richard J. (2015) Draft genome sequence of a European isolate of the apple canker pathogen Neonectria ditissima. Genome Announcements, 3 (6):e01243-15. ISSN 2169-8287 (Online) (doi:10.1128/genomeA.01243-15)

avirulence

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Lysøe, Erik, Nellist, Charlotte F. ORCID: https://orcid.org/0000-0002-7453-3710, Lewis, Laura A., Cano, Liliana M., Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 and Brurberg, May B. (2018) Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PLOS ONE, 13 (10):e0202305. ISSN 1932-6203 (Online) (doi:10.1371/journal.pone.0202305)

Hulin, Michelle T., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

Fan, Rong, Cockerton, Helen M., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen, Cascant-Lopez, Emma, Antanaviciute, Laima, Xu, Xiangming, Hu, Xiaoping and Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 (2018) Vegetative compatibility groups partition variation in the virulence of Verticillium dahliae on strawberry. PLOS ONE, 13 (2):e0191824. ISSN 1932-6203 (Online) (doi:10.1371/journal.pone.0191824)

bacterial canker

basal rot

Taylor, Andrew, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Handy, Claire, Jackson, Alison C., Hulin, Michelle T., Harrison, Richard J. and Clarkson, John P. (2019) Basal rot of Narcissus: understanding pathogenicity in Fusarium oxysporum f. sp. narcissi. Frontiers in Microbiology, 10:2905. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2019.02905)

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Hulin, Michelle T., Jackson, Alison C., Harrison, Richard J. and Clarkson, John P. (2019) Draft genome sequence of an onion basal rot isolate of Fusarium proliferatum. Microbiology Resource Announcements, 8 (1):e01385-18. ISSN 2576-098X (Online) (doi:10.1128/MRA.01385-18)

biofuels

Vega-Estévez, Samuel, Armitage, Andrew ORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: https://orcid.org/0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:10.1128/mBio.01871-21)

biopores

Gregory, Peter J., Atkinson, Christopher J., Bengough, A. Glyn, Else, Mark A., Fernandez-Fernandez, Felicidad, Harrison, Richard J. and Schmidt, Sonja (2013) Contributions of roots and rootstocks to sustainable, intensified crop production. Journal of Experimental Botany, 64 (5). pp. 1209-1222. ISSN 0022-0957 (Print), 1460-2431 (Online) (doi:10.1093/jxb/ers385)

CDC

Colletotrichum gloeosporiodes

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

comparative genomics

crinkler

CRISPR/Cas9

Wilson, Fiona M. ORCID: https://orcid.org/0000-0002-2073-7400, Harrison, Kate, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Simkin, Andrew J. and Harrison, Richard J. (2019) CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry. Plant Methods, 15:45. ISSN 1746-4811 (doi:10.1186/s13007-019-0428-6)

Crown rot

CTG clade yeast

daffodil

diploid

disease complex

Dothideomycete

Dothideomycetes

effector

effector genes

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

effectors

formae speciales

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

Fragaria

fragaria x ananassa

fungal barcoding

Fusarium basal rot

Fusarium oxysporum f. sp. cepae

Fusarium oxysporum f. sp. lactucae

Fusarium oxysporum f. sp. narcissi

Fusarium oxysporum f. sp. pisi

Fusarium wilt

gene expression

Genome

genome plasticity

genomic instability

Gibberella

helitron

host specialization

host-specific toxin

host–microbe interactions

Adams, Thomas M., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)