Article

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID: 0000-0002-0610-763X , Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:https://doi.org/10.3389/fpls.2024.1415534)

Vega-Estévez, Samuel, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: 0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.593140)

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Nellist, Charlotte F. ORCID: 0000-0002-7453-3710 , Bates, Helen J. ORCID: 0000-0002-7978-9213 , Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:https://doi.org/10.1128/MRA.01598-19)

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

Taylor, Andrew, Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Handy, Claire, Jackson, Alison C., Hulin, Michelle T., Harrison, Richard J. and Clarkson, John P. (2019) Basal rot of Narcissus: understanding pathogenicity in Fusarium oxysporum f. sp. narcissi. Frontiers in Microbiology, 10:2905. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.02905)

Wilson, Fiona M. ORCID: 0000-0002-2073-7400 , Harrison, Kate, Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Simkin, Andrew J. and Harrison, Richard J. (2019) CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry. Plant Methods, 15:45. ISSN 1746-4811 (doi:https://doi.org/10.1186/s13007-019-0428-6)

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Hulin, Michelle T., Jackson, Alison C., Harrison, Richard J. and Clarkson, John P. (2019) Draft genome sequence of an onion basal rot isolate of Fusarium proliferatum. Microbiology Resource Announcements, 8 (1):e01385-18. ISSN 2576-098X (Online) (doi:https://doi.org/10.1128/MRA.01385-18)

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Lysøe, Erik, Nellist, Charlotte F. ORCID: 0000-0002-7453-3710 , Lewis, Laura A., Cano, Liliana M., Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Brurberg, May B. (2018) Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PLOS ONE, 13 (10):e0202305. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0202305)

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

Hulin, Michelle T., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID: 0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:https://doi.org/10.1111/nph.15182)

Fan, Rong, Cockerton, Helen M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Bates, Helen, Cascant-Lopez, Emma, Antanaviciute, Laima, Xu, Xiangming, Hu, Xiaoping and Harrison, Richard J. ORCID: 0000-0002-3307-3519 (2018) Vegetative compatibility groups partition variation in the virulence of Verticillium dahliae on strawberry. PLOS ONE, 13 (2):e0191824. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0191824)

Gómez-Cortecero, Antonio, Armitage, Andrew D. ORCID: 0000-0002-0610-763X and Harrison, Richard J. (2015) Draft genome sequence of a European isolate of the apple canker pathogen Neonectria ditissima. Genome Announcements, 3 (6):e01243-15. ISSN 2169-8287 (Online) (doi:https://doi.org/10.1128/genomeA.01243-15)

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Barbara, Dez J., Harrison, Richard J., Lane, Charles R., Sreenivasaprasad, Surapareddy, Woodhall, James W. and Clarkson, John P. (2015) Discrete lineages within Alternaria alternata species group: identification using new highly variable loci and support from morphological characters. Fungal Biology, 119 (11). pp. 994-1006. ISSN 1878-6146 (doi:https://doi.org/10.1016/j.funbio.2015.06.012)

Gregory, Peter J., Atkinson, Christopher J., Bengough, A. Glyn, Else, Mark A., Fernandez-Fernandez, Felicidad, Harrison, Richard J. and Schmidt, Sonja (2013) Contributions of roots and rootstocks to sustainable, intensified crop production. Journal of Experimental Botany, 64 (5). pp. 1209-1222. ISSN 0022-0957 (Print), 1460-2431 (Online) (doi:https://doi.org/10.1093/jxb/ers385)