Items where Author is "Armitage, Andrew D."

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Alternaria mali apple black spot apple canker apple scab ascospore production avirulence bacterial canker basal rot BioProject PRJNA935342 biotroph breeding Colletotrichum gloeosporiodes colletotrichum siamense colletotrichum truncatum comparative genomics crinkler CRISPR/Cas9 Crown rot daffodil diploid disease complex disease resistance Dothideomycete effector effector genes effectors formae speciales Fragaria Fragaria x ananassa fungal barcoding Fusarium basal rot Fusarium oxysporum f. sp. cepae Fusarium oxysporum f. sp. narcissi Fusarium oxysporum f. sp. pisi Fusarium wilt gene expression Genome Gibberella horticulture host mixture host specialization host–microbe interactions mycology nanopore sequencing Narcissus NBS NDVI nectria NGS octopoid onion oomycete pathogenicity pathotype Pea phytoene desaturase polyploid population resequencing prediction Pseudomonas qPCR race race structure red core RNA-Seq Rubus RxLR Secreted In Xylem secreted in xylem (SIX) section SIX2 species complex Sphaerotheca macularis SRA accessions SRR23476212 and SRR23476213 strawberry super-race toxins type III effectors VCG venturia inaequalis genome wilt

Number of items: 95.

Alternaria mali

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Barbara, Dez J., Harrison, Richard J., Lane, Charles R., Sreenivasaprasad, Surapareddy, Woodhall, James W. and Clarkson, John P. (2015) Discrete lineages within Alternaria alternata species group: identification using new highly variable loci and support from morphological characters. Fungal Biology, 119 (11). pp. 994-1006. ISSN 1878-6146 (doi:10.1016/j.funbio.2015.06.012)

apple black spot

Passey, Thomas A. J. ORCID: https://orcid.org/0000-0002-5678-2481, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Shaw, Michael W. ORCID: https://orcid.org/0000-0002-6993-048X and Xu, Xiangming ORCID: https://orcid.org/0000-0002-4567-7117 (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:10.1111/ppa.13150)

Passey, Thomas A. J. ORCID: https://orcid.org/0000-0002-5678-2481, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X and Xu, Xiangming (2018) Annotated draft genome sequence of the apple scab pathogen Venturia inaequalis. Microbiology Resource Announcements, 7 (12):e01062-18. ISSN 2576-098X (Online) (doi:10.1128/mra.01062-18)

apple canker

Gómez-Cortecero, Antonio, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X and Harrison, Richard J. (2015) Draft genome sequence of a European isolate of the apple canker pathogen Neonectria ditissima. Genome Announcements, 3 (6):e01243-15. ISSN 2169-8287 (Online) (doi:10.1128/genomeA.01243-15)

apple scab

ascospore production

avirulence

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Lysøe, Erik, Nellist, Charlotte F. ORCID: https://orcid.org/0000-0002-7453-3710, Lewis, Laura A., Cano, Liliana M., Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 and Brurberg, May B. (2018) Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PLOS ONE, 13 (10):e0202305. ISSN 1932-6203 (Online) (doi:10.1371/journal.pone.0202305)

Hulin, Michelle T., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

Fan, Rong, Cockerton, Helen M., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen, Cascant-Lopez, Emma, Antanaviciute, Laima, Xu, Xiangming, Hu, Xiaoping and Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 (2018) Vegetative compatibility groups partition variation in the virulence of Verticillium dahliae on strawberry. PLOS ONE, 13 (2):e0191824. ISSN 1932-6203 (Online) (doi:10.1371/journal.pone.0191824)

bacterial canker

basal rot

Taylor, Andrew, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Handy, Claire, Jackson, Alison C., Hulin, Michelle T., Harrison, Richard J. and Clarkson, John P. (2019) Basal rot of Narcissus: understanding pathogenicity in Fusarium oxysporum f. sp. narcissi. Frontiers in Microbiology, 10:2905. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2019.02905)

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Hulin, Michelle T., Jackson, Alison C., Harrison, Richard J. and Clarkson, John P. (2019) Draft genome sequence of an onion basal rot isolate of Fusarium proliferatum. Microbiology Resource Announcements, 8 (1):e01385-18. ISSN 2576-098X (Online) (doi:10.1128/MRA.01385-18)

BioProject PRJNA935342

Ogunsanya, Olaide M., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Afolabi, Clement G., Oyatomi, Olaniyi, Thompson, Elinor P. ORCID: https://orcid.org/0000-0002-6434-9290, Ortega-Beltran, Alejandro and Abberton, Michael (2024) Whole genome sequences of Colletotrichum siamense and Colletotrichum truncatum, causal agents of pod and foliar diseases on African yam bean. Microbiology Resource Announcements. ISSN 2576-098X (Online) (doi:10.1128/mra.00722-24)

biotroph

Heaven, Thomas, Cockerton, Helen M., Xu, Xiangming, Goddard, Mat and Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X (2023) A genomic resource for the strawberry powdery mildew pathogen Podosphaera aphanis. Phytopathology, 113 (2). pp. 355-359. ISSN 0031-949X (Print), 1943-7684 (Online) (doi:10.1094/PHYTO-03-22-0091-A)

breeding

Cockerton, Helen M., Li, Bo, Vickerstaff, Robert J., Eyre, Catherine A., Sargent, Daniel J., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Marina-Montes, Cesar, Garcia-Cruz, Ana, Passey, Andrew J., Simpson, David W. and Harrison, Richard Jonathan (2019) Identifying Verticillium dahliae resistance in strawberry through disease screening of multiple populations and image based phenotyping. Frontiers in Plant Science, 10:924. ISSN 1664-462X (Online) (doi:10.3389/fpls.2019.00924)

Colletotrichum gloeosporiodes

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

colletotrichum siamense

colletotrichum truncatum

comparative genomics

crinkler

CRISPR/Cas9

Wilson, Fiona M. ORCID: https://orcid.org/0000-0002-2073-7400, Harrison, Kate, Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Simkin, Andrew J. and Harrison, Richard J. (2019) CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry. Plant Methods, 15:45. ISSN 1746-4811 (doi:10.1186/s13007-019-0428-6)

Crown rot

daffodil

diploid

disease complex

disease resistance

Dothideomycete

effector

effector genes

Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

effectors

formae speciales

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

Fragaria

Fragaria x ananassa

fungal barcoding

Fusarium basal rot

Fusarium oxysporum f. sp. cepae

Fusarium oxysporum f. sp. narcissi

Fusarium oxysporum f. sp. pisi

Fusarium wilt

gene expression

Genome

Gibberella

horticulture

host mixture

host specialization

host–microbe interactions

Adams, Thomas M., Armitage, Andrew D. ORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)