Richie-Halford, Adam, Cieslak, Matthew, Ai, Lei, Caffarra, Sendy, Covitz, Sydney, Franco, Alexandre R., Karipidis, Iliana I., Kruper, John, Milham, Michael, Avelar-Pereira, Bárbara, Roy, Ethan, Sydnor, Valerie J., Yeatman, Jason D., Satterthwaite, Theodore D., Rokem, Ariel, Abbott, NJ, Anderson, JAE, Gagana, B, Bleile, M, Bloomfield, PS, Bottom, V, Bourque, J, Boyle, R, Brynildsen, JK, Calarco, N, Castrellon, JJ, Chaku, N, Chen, B, Chopra, S, Coffey, EBJ, Colenbier, N, Cox, DJ, Crippen, JE, Crouse, JJ, David, S, Leener, BD, Delap, G, Deng, Z-D, Dugre, JR, Eklund, A, Ellis, K, Ered, A, Farmer, Harry ORCID: https://orcid.org/0000-0002-3684-0605, Faskowitz, J, Finch, JE, Flandin, G, Flounders, MW, Fonville, L, Frandsen, SB, Garic, D, Garrido-Vásquez, P, Gonzalez-Escamilla, G, Grogans, SE, Grotheer, M, Gruskin, DC, Guberman, GI, Haggerty, EB, Hahn, Y, Hall, EH, Hanson, JL, Harel, Y, Vieira, BH, Hettwer, MD, Hobday, H, Horien, C, Huang, F, Huque, ZM, James, AR, Kahhale, I, Kamhout, SLH, Keller, AS, Khera, HS, Kiar, G, Kirk, PA, Kohl, SH, Korenic, SA, Korponay, C, Kozlowski, AK, Kraljevic, N, Lazari, A, Leavitt, MJ, Li, Z, Liberati, G, Lorenc, ES, Lossin, AJ, Lotter, LD, Lydon-Staley, DM, Madan, CR, Magielse, N, Marusak, HA, Mayor, J, McGowan, AL, Mehta, KP, Meisler, SL, Michael, C, Mitchell, ME, Morand-Beaulieu, S, Newman, BT, Nielsen, JA, O’Mara, SM, Ojha, A, Omary, A, Özarslan, E, Peterson, M, Pines, AR, Pisanu, C, Rich, RR, Sacchet, MD, Sahoo, AK, Samara, A, Sayed, F, Schneider, JT, Shaffer, LS, Shatalina, E, Sims, SA, Sinclair, S, Song, JW, Hogrogian, GS, Tamnes, CK, Tooley, UA, Tripathi, V, Turker, HB, Valk, SL, Wall, MB, Walther, CK, Wang, Y, Wegmann, B, Welton, T, Wiesman, AI, Wiesman, AG, Wiesman, M, Winters, DE, Yuan, R, Zacharek, SJ, Zajner, C, Zakharov, I, Zammarchi, G, Zhou, D ORCID: https://orcid.org/0000-0001-7132-5935, Zimmerman, B and Zoner, K (2022) An analysis-ready and quality controlled resource for pediatric brain white-matter research. Scientific Data, 9:616. pp. 1-27. ISSN 2052-4463 (Online) (doi:10.1038/s41597-022-01695-7)

Preview

PDF (VoR) 47361_FARMER_An_analysis-ready_and_quality_controlled_resource_for_pediatric_brain_white-matter_research.pdf - Published Version Available under License Creative Commons Attribution. Download (6MB) | Preview

Abstract

We created a set of resources to enable research based on openly-available diffusion MRI (dMRI) data from the Healthy Brain Network (HBN) study. First, we curated the HBN dMRI data (N = 2747) into the Brain Imaging Data Structure and preprocessed it according to best-practices, including denoising and correcting for motion effects, susceptibility-related distortions, and eddy currents. Preprocessed, analysis-ready data was made openly available. Data quality plays a key role in the analysis of dMRI. To optimize QC and scale it to this large dataset, we trained a neural network through the combination of a small data subset scored by experts and a larger set scored by community scientists. The network performs QC highly concordant with that of experts on a held out set (ROC-AUC = 0.947). A further analysis of the neural network demonstrates that it relies on image features with relevance to QC. Altogether, this work both delivers resources to advance transdiagnostic research in brain connectivity and pediatric mental health, and establishes a novel paradigm for automated QC of large datasets.

BárbaraAvelar-Pereira 9
, EthanRoy2
, Valerie J.Sydnor3,4,5,
JasonD.Yeatman1,2, The Fibr Community Science Consortium*, TheodoreD.Satterthwaite3,4,5,88
& Ariel Rokem

Item Type:	Article
Uncontrolled Keywords:	brain white matter; neuroimaging; Diffusion Weighted Magnetic Resonance Imaging; AI
Subjects:	B Philosophy. Psychology. Religion > BF Psychology R Medicine > RC Internal medicine > RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry R Medicine > RJ Pediatrics
Faculty / School / Research Centre / Research Group:	Faculty of Education, Health & Human Sciences Faculty of Education, Health & Human Sciences > Institute for Lifecourse Development Faculty of Education, Health & Human Sciences > Institute for Lifecourse Development > Centre for Inequalities Faculty of Education, Health & Human Sciences > School of Human Sciences (HUM)
Last Modified:	23 Sep 2024 11:47
URI:	http://gala.gre.ac.uk/id/eprint/47361

Actions (login required)

View Item

Downloads