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accessory chromosome Alternaria gaisen Alternaria mali antimicrobial resistance basal rot broilers Campylobacter CDC crown rot cryptic species daffodil Dothideomycetes effector effectors ESBL food safety foodborne bacterial pathogens formae speciales fresh produce production systems Fusarium oxysporum f. sp. narcissi Fusarium oxysporum f. sp. pisi Fusarium wilt gastrointestinal gene expression genome host-specific toxin host–microbe interactions iron chelates irrigation water leafy green vegetables leafy greens Lewis b (Leb) antigen lineage specific major outer membrane protein (MOMP) mating type multidrug resistance nanopore nanopore sequencing Narcissus Onchocerciasis oomycete pandemic pathogenicity Pea Phoenix dactylifera phylogenomics population resequencing qPCR race race structure red core RNA-Seq Secreted In Xylem Serine recombinase Simulium squamosum E SpvB protein homolog WGS Wolbachia Wolbachia phages

Number of items: 62.

accessory chromosome

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

Alternaria gaisen

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

Alternaria mali

antimicrobial resistance

Richter, Loandi, du Plessis, Erika M., Duvenage, Stacey ORCID: 0000-0002-5984-1491 and Korsten, Lise (2020) Occurrence, Phenotypic and Molecular Characterization of Extended-Spectrum- and AmpC- β-Lactamase Producing Enterobacteriaceae Isolated From Selected Commercial Spinach Supply Chains in South Africa. Frontiers in Microbiology, 11. ISSN 1664-302X (doi:https://doi.org/10.3389/fmicb.2020.00638)

basal rot

Taylor, Andrew, Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Handy, Claire, Jackson, Alison C., Hulin, Michelle T., Harrison, Richard J. and Clarkson, John P. (2019) Basal rot of Narcissus: understanding pathogenicity in Fusarium oxysporum f. sp. narcissi. Frontiers in Microbiology, 10:2905. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.02905)

broilers

Okoye, Jennifer C., Holland, Alexandria, Pitoulias, Matthaios, Paschalis, Vasileios, Piddubnyi, Artem, Dufailu, Osman ORCID: 0000-0002-8291-9832 , Boren, Thomas, Oldfield, Neil J., Mahdavi, Jafar and Soultanas, Panos (2023) Ferric quinate (QPLEX) inhibits the interaction of major outer membrane protein (MOMP) with the Lewis b (Leb) antigen and limits Campylobacter colonization in broilers. Frontiers in Microbiology, 14. pp. 1-12. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1146418)

Campylobacter

CDC

crown rot

Armitage, Andrew ORCID: 0000-0002-0610-763X , Nellist, Charlotte, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021) Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)

cryptic species

daffodil

Dothideomycetes

effector

effectors

ESBL

food safety

Richter, Loandi, du Plessis, Erika M., Duvenage, Stacey ORCID: 0000-0002-5984-1491 , Allam, Mushal, Ismail, Arshad and Korsten, Lise (2021) Whole genome sequencing of extended-spectrum- and AmpC- β-lactamase -positive enterobacterales isolated from spinach production in Gauteng Province, South Africa. Frontiers in Microbiology, 12:734649. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.734649)

foodborne bacterial pathogens

formae speciales

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.593140)

fresh produce production systems

Fusarium oxysporum f. sp. narcissi

Fusarium oxysporum f. sp. pisi

Fusarium wilt

gastrointestinal

gene expression

genome

host-specific toxin

host–microbe interactions

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

iron chelates

irrigation water

leafy green vegetables

leafy greens

Lewis b (Leb) antigen

lineage specific

major outer membrane protein (MOMP)

mating type

multidrug resistance

nanopore

nanopore sequencing

Narcissus

Onchocerciasis

Crainey, James L., Hurst, Jacob, Lamberton, Poppy H.L., Cheke, Robert A. ORCID: 0000-0002-7437-1934 , Griffin, Claire E., Wilson, Michael D., De Araújo, Cláudia P. Mendes, Basáñez, María-Gloria and Post, Rory J. (2017) The genomic architecture of novel Simulium damnosum Wolbachia prophage sequence elements and implications for onchocerciasis epidemiology. Frontiers in Microbiology, 8:852. pp. 1-17. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2017.00852)

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