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Items where Author is "Bates, Helen J."

Items where Author is "Bates, Helen J."

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accessory genome avirulence bacterial canker biofuels Colletotrichum gloeosporiodes comparative genomics Crown rot CTG clade yeast effector effector genes formae speciales Fragaria Fusarium basal rot Fusarium oxysporum f. sp. cepae Fusarium oxysporum f. sp. lactucae Fusarium oxysporum f. sp. pisi Fusarium wilt gene expression Genome genome plasticity genomic instability Gibberella helitron host specialization host–microbe interactions lettuce nanopore sequencing onion oomycete pathogenicity Pea plant pathogen population resequencing prediction Pseudomonas qPCR race race structure red core RNA-Seq secreted in xylem secreted in xylem (SIX) SIX genes toxins transposons type III effectors
Number of items: 47.

accessory genome

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

avirulence

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

bacterial canker

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

biofuels

Vega-Estévez, Samuel, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID logoORCID: https://orcid.org/0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:10.1128/mBio.01871-21)

Colletotrichum gloeosporiodes

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID logoORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID logoORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

comparative genomics

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

Crown rot

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID logoORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID logoORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

CTG clade yeast

Vega-Estévez, Samuel, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID logoORCID: https://orcid.org/0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:10.1128/mBio.01871-21)

effector

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

effector genes

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID logoORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

formae speciales

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

Fragaria

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID logoORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID logoORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

Fusarium basal rot

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID logoORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

Fusarium oxysporum f. sp. cepae

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID logoORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

Fusarium oxysporum f. sp. lactucae

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

Fusarium oxysporum f. sp. pisi

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

Fusarium wilt

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

gene expression

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

Genome

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID logoORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID logoORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

genome plasticity

Vega-Estévez, Samuel, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID logoORCID: https://orcid.org/0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:10.1128/mBio.01871-21)

genomic instability

Vega-Estévez, Samuel, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID logoORCID: https://orcid.org/0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:10.1128/mBio.01871-21)

Gibberella

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Nellist, Charlotte F. ORCID logoORCID: https://orcid.org/0000-0002-7453-3710, Bates, Helen J. ORCID logoORCID: https://orcid.org/0000-0002-7978-9213, Zhang, Liqing, Zou, Xiaohua, Gao, Qing-Hua, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Rokas, Antonis (2020) Draft genome sequence of the strawberry anthracnose pathogen colletotrichum fructicola. Microbiology Resource Announcements, 9 (12):e01598-19. ISSN 2576-098X (Online) (doi:10.1128/MRA.01598-19)

helitron

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

host specialization

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

host–microbe interactions

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

lettuce

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

nanopore sequencing

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

onion

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID logoORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

oomycete

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

pathogenicity

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID logoORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

Pea

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

plant pathogen

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

population resequencing

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

prediction

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

Pseudomonas

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

qPCR

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

race

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

race structure

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

red core

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

RNA-Seq

Adams, Thomas M., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2020.00490)

secreted in xylem

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Mead, Andrew, Harrison, Richard J. and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:10.3389/fmicb.2021.593140)

secreted in xylem (SIX)

Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID logoORCID: https://orcid.org/0000-0003-3287-7547, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:10.1038/s41598-018-30335-7)

SIX genes

Bates, Helen J., Pike, Jamie, Price, R. Jordan, Jenkins, Sascha, Connell, John, Legg, Andrew, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Harrison, Richard J. and Clarkson, John P. (2024) Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f.sp. lactucae. Frontiers in Plant Science, 15:1415534. ISSN 1664-462X (Online) (doi:10.3389/fpls.2024.1415534)

toxins

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

transposons

Vega-Estévez, Samuel, Armitage, Andrew ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID logoORCID: https://orcid.org/0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:10.1128/mBio.01871-21)

type III effectors

Hulin, Michelle T., Armitage, Andrew D. ORCID logoORCID: https://orcid.org/0000-0002-0610-763X, Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. ORCID logoORCID: https://orcid.org/0000-0002-3307-3519 (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:10.1111/nph.15182)

This list was generated on Tue Dec 31 17:41:25 2024 UTC.