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Items where Author is "Armitage, Andrew"

Items where Author is "Armitage, Andrew"

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Number of items: 67.

accessory chromosome

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

African yam bean

Ogunsanya, Olaide, Afolabi, Clement, Colgan, Richard ORCID: 0000-0002-0653-5845 , Armitage, Andrew ORCID: 0000-0002-0610-763X , Thompson, Elinor ORCID: 0000-0002-6434-9290 , Ortega-beltran, Alejandro and Abberton, Michael (2023) Polyphasic identification of causative pathogens responsible for foliar and pod diseases of African Yam Bean in Nigeria. In: Microbiology Society Annual Conference 2023, 17th - 20th April 2023, Birmingham International Convention Centre. (Unpublished)

Alternaria alternata

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Alternaria gaisen

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

Alternaria mali

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

Alternaria section Alternaria

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Alternariaarborescensspeciescomplex

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Alternariafruitspot

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Alternarialeafblotch

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Bayoud disease

Khayi, Slimane ORCID: 0000-0001-8033-2117 , Armitage, Andrew ORCID: 0000-0002-0610-763X , El Guilli, Mohammed, Meftah Kadmiri, Issam ORCID: 0000-0003-1067-1652 , Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid ORCID: 0000-0002-2040-637X (2021) Complete mitochondrial genome and phylogeny of the causal agent of Bayoud disease on date palm, Fusarium oxysporum f. sp. albedinis. Mitochondrial DNA Part B, 6 (10). pp. 3059-3061. ISSN 2380-2359 (Print), 2380-2359 (Online) (doi:https://doi.org/10.1080/23802359.2021.1978894)

biofuels

Vega-Estévez, Samuel, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: 0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)

biopesticides

Mills, Deanna, Ogunsanya, Olaide, Armitage, Andrew ORCID: 0000-0002-0610-763X , Stevenson, Philip ORCID: 0000-0002-0736-3619 and Harte, Steven ORCID: 0000-0001-9628-7912 (2023) Mining the untapped chemical potential of entomopathogenic fungi. In: LIDo End of Rotation 1 Presentation Day, 17th Feb, 2023, Medical Sciences and Anatomy building, UCL.

biotroph

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

Cassava

Kavil, Siji, Otti, Gerald, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2021) PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava. Virology Journal, 18:184. ISSN 1743-422X (Print), 1743-422X (Online) (doi:https://doi.org/10.1186/s12985-021-01649-2)

CBSD

Kavil, Siji, Otti, Gerald, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2021) PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava. Virology Journal, 18:184. ISSN 1743-422X (Print), 1743-422X (Online) (doi:https://doi.org/10.1186/s12985-021-01649-2)

CDC

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

Colletotrichum

Ogunsanya, Olaide, Afolabi, Clement, Colgan, Richard ORCID: 0000-0002-0653-5845 , Armitage, Andrew ORCID: 0000-0002-0610-763X , Thompson, Elinor ORCID: 0000-0002-6434-9290 , Ortega-beltran, Alejandro and Abberton, Michael (2023) Polyphasic identification of causative pathogens responsible for foliar and pod diseases of African Yam Bean in Nigeria. In: Microbiology Society Annual Conference 2023, 17th - 20th April 2023, Birmingham International Convention Centre. (Unpublished)

crown rot

Armitage, Andrew ORCID: 0000-0002-0610-763X , Nellist, Charlotte, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021) Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)

cryptic species

Armitage, Andrew ORCID: 0000-0002-0610-763X , Nellist, Charlotte, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021) Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)

CTG clade yeast

Vega-Estévez, Samuel, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: 0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)

date palm

Khayi, Slimane ORCID: 0000-0001-8033-2117 , Armitage, Andrew ORCID: 0000-0002-0610-763X , El Guilli, Mohammed, Meftah Kadmiri, Issam ORCID: 0000-0003-1067-1652 , Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid ORCID: 0000-0002-2040-637X (2021) Complete mitochondrial genome and phylogeny of the causal agent of Bayoud disease on date palm, Fusarium oxysporum f. sp. albedinis. Mitochondrial DNA Part B, 6 (10). pp. 3059-3061. ISSN 2380-2359 (Print), 2380-2359 (Online) (doi:https://doi.org/10.1080/23802359.2021.1978894)

diversity

Khayi, Slimane ORCID: 0000-0001-8033-2117 , Armitage, Andrew ORCID: 0000-0002-0610-763X , El Guilli, Mohammed, Meftah Kadmiri, Issam ORCID: 0000-0003-1067-1652 , Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid ORCID: 0000-0002-2040-637X (2021) Complete mitochondrial genome and phylogeny of the causal agent of Bayoud disease on date palm, Fusarium oxysporum f. sp. albedinis. Mitochondrial DNA Part B, 6 (10). pp. 3059-3061. ISSN 2380-2359 (Print), 2380-2359 (Online) (doi:https://doi.org/10.1080/23802359.2021.1978894)

dose response

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

Dothideomycetes

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

effector

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew ORCID: 0000-0002-0610-763X , Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)

effectors

Armitage, Andrew ORCID: 0000-0002-0610-763X , Nellist, Charlotte, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021) Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)

entomopathogenic fungi

Mills, Deanna, Ogunsanya, Olaide, Armitage, Andrew ORCID: 0000-0002-0610-763X , Stevenson, Philip ORCID: 0000-0002-0736-3619 and Harte, Steven ORCID: 0000-0001-9628-7912 (2023) Mining the untapped chemical potential of entomopathogenic fungi. In: LIDo End of Rotation 1 Presentation Day, 17th Feb, 2023, Medical Sciences and Anatomy building, UCL.

evolution

Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew ORCID: 0000-0002-0610-763X , Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)

Fusarium oxysporum

Khayi, Slimane ORCID: 0000-0001-8033-2117 , Armitage, Andrew ORCID: 0000-0002-0610-763X , El Guilli, Mohammed, Meftah Kadmiri, Issam ORCID: 0000-0003-1067-1652 , Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid ORCID: 0000-0002-2040-637X (2021) Complete mitochondrial genome and phylogeny of the causal agent of Bayoud disease on date palm, Fusarium oxysporum f. sp. albedinis. Mitochondrial DNA Part B, 6 (10). pp. 3059-3061. ISSN 2380-2359 (Print), 2380-2359 (Online) (doi:https://doi.org/10.1080/23802359.2021.1978894)

genome

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

genome plasticity

Vega-Estévez, Samuel, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: 0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)

genomic instability

Vega-Estévez, Samuel, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: 0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)

genomics

Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew ORCID: 0000-0002-0610-763X , Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)

genotyping by sequencing

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

host-specific toxin

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

HPLC

Mills, Deanna, Ogunsanya, Olaide, Armitage, Andrew ORCID: 0000-0002-0610-763X , Stevenson, Philip ORCID: 0000-0002-0736-3619 and Harte, Steven ORCID: 0000-0001-9628-7912 (2023) Mining the untapped chemical potential of entomopathogenic fungi. In: LIDo End of Rotation 1 Presentation Day, 17th Feb, 2023, Medical Sciences and Anatomy building, UCL.

induction

Kavil, Siji, Otti, Gerald, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2021) PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava. Virology Journal, 18:184. ISSN 1743-422X (Print), 1743-422X (Online) (doi:https://doi.org/10.1186/s12985-021-01649-2)

lineage specific

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

linkage map

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

mating type

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

metabolites

Mills, Deanna, Ogunsanya, Olaide, Armitage, Andrew ORCID: 0000-0002-0610-763X , Stevenson, Philip ORCID: 0000-0002-0736-3619 and Harte, Steven ORCID: 0000-0001-9628-7912 (2023) Mining the untapped chemical potential of entomopathogenic fungi. In: LIDo End of Rotation 1 Presentation Day, 17th Feb, 2023, Medical Sciences and Anatomy building, UCL.

metabolomics

Mills, Deanna, Ogunsanya, Olaide, Armitage, Andrew ORCID: 0000-0002-0610-763X , Stevenson, Philip ORCID: 0000-0002-0736-3619 and Harte, Steven ORCID: 0000-0001-9628-7912 (2023) Mining the untapped chemical potential of entomopathogenic fungi. In: LIDo End of Rotation 1 Presentation Day, 17th Feb, 2023, Medical Sciences and Anatomy building, UCL.

mitogenome

Khayi, Slimane ORCID: 0000-0001-8033-2117 , Armitage, Andrew ORCID: 0000-0002-0610-763X , El Guilli, Mohammed, Meftah Kadmiri, Issam ORCID: 0000-0003-1067-1652 , Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid ORCID: 0000-0002-2040-637X (2021) Complete mitochondrial genome and phylogeny of the causal agent of Bayoud disease on date palm, Fusarium oxysporum f. sp. albedinis. Mitochondrial DNA Part B, 6 (10). pp. 3059-3061. ISSN 2380-2359 (Print), 2380-2359 (Online) (doi:https://doi.org/10.1080/23802359.2021.1978894)

Molecular biology

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

nanopore

Armitage, Andrew ORCID: 0000-0002-0610-763X , Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)

Oomycete

Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew ORCID: 0000-0002-0610-763X , Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)

Armitage, Andrew ORCID: 0000-0002-0610-763X , Nellist, Charlotte, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021) Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)

PAL1

Kavil, Siji, Otti, Gerald, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2021) PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava. Virology Journal, 18:184. ISSN 1743-422X (Print), 1743-422X (Online) (doi:https://doi.org/10.1186/s12985-021-01649-2)

pandemic

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

Pathogenic fungi

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Pathogenicity of plant pathogens

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

Phoenix dactylifera

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

phylogenomics

Khayi, Slimane, Armitage, Andrew ORCID: 0000-0002-0610-763X , Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)

Armitage, Andrew ORCID: 0000-0002-0610-763X , Nellist, Charlotte, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021) Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)

Phytophthora

Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew ORCID: 0000-0002-0610-763X , Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)

plant pathogen

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

Plant pathology

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

plant-pathogen

Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew ORCID: 0000-0002-0610-763X , Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)

polygenic

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

quantitative trait loci (QTLs)

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

resistance

Kavil, Siji, Otti, Gerald, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Maruthi, M.N. ORCID: 0000-0002-8060-866X (2021) PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava. Virology Journal, 18:184. ISSN 1743-422X (Print), 1743-422X (Online) (doi:https://doi.org/10.1186/s12985-021-01649-2)

single nucleotide polymorphism (SNP)

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

Small-spored Alternaria

Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew ORCID: 0000-0002-0610-763X , Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)

tebuconazole

Heaven, Thomas, Armitage, Andrew ORCID: 0000-0002-0610-763X , Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)

transposons

Vega-Estévez, Samuel, Armitage, Andrew ORCID: 0000-0002-0610-763X , Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia ORCID: 0000-0002-1704-3168 (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)

This list was generated on Thu May 2 17:25:27 2024 UTC.