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Items where Author is "Seal, Susan"

Items where Author is "Seal, Susan"

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abundance Africa agricultural pests and plant-virus disease vectors agro-ecological regions agro-ecological zone alata alpha-glucosidase aphids aquaporin Asia 1 mtCOI bacilliform virus Bacterial endosymbionts Badna-PCR Badnavirus Bemisia tabaci Bemisia tabaci whitefly species bioinformatics biological species biological traits biosafety biotechnology Busco canna Capacity building cassava cassava brown streak disease cassava brown streak ipomoviruses Cassava mosaic disease cassava mosaic-virus cladogenesis common bean comparative genomics constitutive and plastic expression control crop biotechnology crop yields cryptic species damage detoxification diagnostic diagnostics Diet breadth Differential transmission Dioscorea spp. Dioscorea yam disease Diversification diversity dna DNA extraction DNA satellite molecules DNA transposons ELISA emerging disease epidemics Endogenous pararetrovirus Endogenous pararetroviruses endosymbiont epidemiology Episomal badnavirus expression Fastqc five families: Caulimoviridae food security geminiviruses gene expression gene flow gene silencing gene targets genetic differentiation genetic variation genome assembly Ghana glutathione S-transferase haplotype Hepadnaviridae horizontal genes horizontally acquired genes host adaptation host-plants ICTV report and caulimoviridae Illumina adapters Immunosorbent electron microscopy impact Insect‐plant interactions insect–plant interactions Invasiveness isothermal amplification LAMP leaf beetle leaf curl virus life-history traits liquid-chromatography lysine Maize streak virus management implications Metaviridae microsatellites mitochondrial DNA Mitochondrial phylogenetic groups model law molecular evolution molecular mechanisms MSV myzus-persicae homoptera next generation sequencing Nigeria Ootheca spp. Optimal foraging theory Optimal oviposition theory osmoregulation PCR performance pest pest management phylogenetics phylogenomics plant damage policy polyphagy Portiera positive selection Potyvirus Pseudoviridae quality control quantitative real-time (QRT)-PCR Quast RAD-Seq Rapid diagnostics reciprocal crossing Recombinase polymerase amplification recombination regulation reproductive compatibility Retroviridae Reverse-transcribing viruses rhopalosiphum-padi homoptera RNA interference Rolling circle amplification RT-LAMP RT-qPCR sap-feeding insect seed systems species complex spotted wilt virus Sri Lankan cassava mosaic virus SSA3 sub-Saharan Africa species sucrase superabundance Survival analysis swollen shoot virus symbiosis tabaci gennadius hemiptera taxonomic changes taxonomy TE annotation The International Committee on Taxonomy of Viruses (ICTV) transcription profiling transcriptome transcriptome assembly transposable elements transposons Trimmomatic trinity Uganda virus virus diagnostics Virus transmission West Africa whiteflies whitefly Whitefly complex whitefly species whitefly-transmitted geminiviruses yam Yam mosaic virus yellow-dwarf-virus
Number of items: 207.

abundance

Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert ORCID: 0000-0002-7437-1934 , Wagner, Thomas, Seal, Susan ORCID: 0000-0002-3952-1562 , Kriticos, Darren J. and Otim, Michael H. (2021) Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda. Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048. pp. 1-12. ISSN 2075-4450 (Print), 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12111048)

Africa

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

agricultural pests and plant-virus disease vectors

Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Wang, Hua-Ling, Patel, Mitulkumar V., Kabaalu, Richard, Omongo, Christopher A., Alicai, Titus, Tairo, Fred, Ndunguru, Joseph, Sseruwagi, Peter and Colvin, John (2018) African ancestry of New World, Bemisia tabaci-whitefly species. Scientific Reports, 8 (1):2734. ISSN 2045-2322 (Print), 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-20956-3)

agro-ecological regions

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

agro-ecological zone

Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert ORCID: 0000-0002-7437-1934 , Wagner, Thomas, Seal, Susan ORCID: 0000-0002-3952-1562 , Kriticos, Darren J. and Otim, Michael H. (2021) Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda. Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048. pp. 1-12. ISSN 2075-4450 (Print), 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12111048)

alata

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

alpha-glucosidase

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

aphids

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

aquaporin

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

Asia 1 mtCOI

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

bacilliform virus

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

Bacterial endosymbionts

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

Badna-PCR

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Badnavirus

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

Bemisia tabaci

Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda ORCID: 0000-0002-8060-866X , Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan ORCID: 0000-0002-3952-1562 , Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S (2024) A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Insect Science. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.13361)

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan ORCID: 0000-0002-3952-1562 and Luan, Jun-Bo (2021) Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11):e1010120. ISSN 1553-7366 (Print), 1553-7374 (Online) (doi:https://doi.org/10.1371/journal.ppat.1010120)

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2020) Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies. Insect Science, 28 (6). pp. 1553-1566. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.12881)

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

Chi, Yao, Pan, Li-Long, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2019) Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 15. pp. 141-149. ISSN 0042-6822 (doi:https://doi.org/10.1016/j.virol.2019.11.013)

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

Vyskočilová, Soňa, Tay, Wee Tek, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2018) An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex. Scientific Reports, 8:10886. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-29305-w)

Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan ORCID: 0000-0002-3952-1562 , Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter (2018) Review and guide to a future naming system of African Bemisia tabaci species. Systematic Entomology, 43 (3). pp. 427-433. ISSN 0307-6970 (Print), 1365-3113 (Online) (doi:https://doi.org/10.1111/syen.12294)

Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan ORCID: 0000-0002-3952-1562 (2014) Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR. Journal of Insect Science, 14 (1):63. pp. 1-25. ISSN 1536-2442 (doi:https://doi.org/10.1673/031.014.63)

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

Bemisia tabaci whitefly species

Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Wang, Hua-Ling, Patel, Mitulkumar V., Kabaalu, Richard, Omongo, Christopher A., Alicai, Titus, Tairo, Fred, Ndunguru, Joseph, Sseruwagi, Peter and Colvin, John (2018) African ancestry of New World, Bemisia tabaci-whitefly species. Scientific Reports, 8 (1):2734. ISSN 2045-2322 (Print), 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-20956-3)

bioinformatics

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

biological species

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

biological traits

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Sseruwagi, Peter, Colvin, John and Seal, Susan ORCID: 0000-0002-3952-1562 (2021) Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species? Insects, 12 (3):260. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12030260)

biosafety

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

biotechnology

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

Busco

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

canna

Monger, W.A., Harju, V., Skelton, A., Seal, Susan ORCID: 0000-0002-3952-1562 and Mumford, R.A. (2007) Brief Report: Canna yellow streak virus: a new potyvirus associated with severe streaking symptoms in canna. Archives of Virology, 152 (8). pp. 1527-1530. ISSN 0304-8608 (doi:https://doi.org/10.1007/s00705-007-0977-2)

Capacity building

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

cassava

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

cassava brown streak disease

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

cassava brown streak ipomoviruses

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

Cassava mosaic disease

Chi, Yao, Pan, Li-Long, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2019) Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 15. pp. 141-149. ISSN 0042-6822 (doi:https://doi.org/10.1016/j.virol.2019.11.013)

cassava mosaic-virus

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

cladogenesis

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

common bean

Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert ORCID: 0000-0002-7437-1934 , Wagner, Thomas, Seal, Susan ORCID: 0000-0002-3952-1562 , Kriticos, Darren J. and Otim, Michael H. (2021) Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda. Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048. pp. 1-12. ISSN 2075-4450 (Print), 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12111048)

comparative genomics

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

constitutive and plastic expression

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

control

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

crop biotechnology

Seal, Susan ORCID: 0000-0002-3952-1562 , Sangare, A. and Makinde, M. (2008) Crop biotechnology and biosafety. SCARDA Briefing Papers Strengthening Capacity for Agricultural Research and Development in Africa. Forum for Agricultural Research in Africa, Accra, pp. 24-32. ISBN 978-9988-1-1063-4

crop yields

Seal, Susan ORCID: 0000-0002-3952-1562 , Sangare, A. and Makinde, M. (2008) Crop biotechnology and biosafety. SCARDA Briefing Papers Strengthening Capacity for Agricultural Research and Development in Africa. Forum for Agricultural Research in Africa, Accra, pp. 24-32. ISBN 978-9988-1-1063-4

cryptic species

Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda ORCID: 0000-0002-8060-866X , Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan ORCID: 0000-0002-3952-1562 , Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S (2024) A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Insect Science. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.13361)

damage

Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert ORCID: 0000-0002-7437-1934 , Wagner, Thomas, Seal, Susan ORCID: 0000-0002-3952-1562 , Kriticos, Darren J. and Otim, Michael H. (2021) Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda. Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048. pp. 1-12. ISSN 2075-4450 (Print), 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12111048)

detoxification

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

diagnostic

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

diagnostics

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Diet breadth

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

Differential transmission

Chi, Yao, Pan, Li-Long, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2019) Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 15. pp. 141-149. ISSN 0042-6822 (doi:https://doi.org/10.1016/j.virol.2019.11.013)

Dioscorea spp.

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Seal, Susan ORCID: 0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:https://doi.org/10.1016/j.cpb.2020.100156)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Dioscorea yam

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

disease

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

Diversification

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

diversity

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

dna

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

DNA extraction

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

DNA satellite molecules

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

DNA transposons

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

ELISA

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

emerging disease epidemics

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

Endogenous pararetrovirus

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Endogenous pararetroviruses

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

endosymbiont

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

epidemiology

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

Episomal badnavirus

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

expression

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

Fastqc

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

five families: Caulimoviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

food security

Nanyiti, Sarah, Kabaalu, Richard, Alicai, Titus, Abidrabo, Phillip, Seal, Susan ORCID: 0000-0002-3952-1562 , Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Bailey, A and Foster, Gary (2023) Detection of cassava brown streak ipomoviruses in aphids collected from cassava plants. Frontiers in Sustainable Food Systems, 7:1027842. pp. 1-9. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1027842)

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

geminiviruses

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

gene expression

Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan ORCID: 0000-0002-3952-1562 (2014) Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR. Journal of Insect Science, 14 (1):63. pp. 1-25. ISSN 1536-2442 (doi:https://doi.org/10.1673/031.014.63)

gene flow

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

gene silencing

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

gene targets

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

genetic differentiation

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

genetic variation

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

genome assembly

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

Ghana

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Seal, Susan ORCID: 0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:https://doi.org/10.1016/j.cpb.2020.100156)

glutathione S-transferase

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

haplotype

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

Hepadnaviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

horizontal genes

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

horizontally acquired genes

Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan ORCID: 0000-0002-3952-1562 and Luan, Jun-Bo (2021) Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11):e1010120. ISSN 1553-7366 (Print), 1553-7374 (Online) (doi:https://doi.org/10.1371/journal.ppat.1010120)

host adaptation

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

host-plants

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

ICTV report and caulimoviridae

Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 , Stavolone, Livia and Umber, Marie (2020) ICTV virus taxonomy profile: caulimoviridae. Journal of General Virology, 101 (10). pp. 1025-1026. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:https://doi.org/10.1099/jgv.0.001497)

Illumina adapters

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Immunosorbent electron microscopy

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

impact

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

Insect‐plant interactions

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

insect–plant interactions

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

Invasiveness

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

isothermal amplification

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Kumar, Lava P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:https://doi.org/10.1016/j.ab.2018.01.019)

LAMP

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

leaf beetle

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

leaf curl virus

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

life-history traits

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

liquid-chromatography

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

lysine

Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan ORCID: 0000-0002-3952-1562 and Luan, Jun-Bo (2021) Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11):e1010120. ISSN 1553-7366 (Print), 1553-7374 (Online) (doi:https://doi.org/10.1371/journal.ppat.1010120)

Maize streak virus

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

management implications

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Sseruwagi, Peter, Colvin, John and Seal, Susan ORCID: 0000-0002-3952-1562 (2021) Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species? Insects, 12 (3):260. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12030260)

Metaviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

microsatellites

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

mitochondrial DNA

Kanyesigye, Dalton, Pius Alibu, Vincent, Tek Tay, Wee, Nalela, Polycarp, Paparu, Pamela, Olaboro, Samuel, Tamusange Nkalubo, Stanley, Siraj Kayondo, Ismail, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Seal, Susan ORCID: 0000-0002-3952-1562 and Hilary Otim, Michael (2022) Population genetic structure of the bean leaf beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda. Insects, 13 (6):543. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects13060543)

Mitochondrial phylogenetic groups

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

model law

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

molecular evolution

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

molecular mechanisms

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

MSV

Tembo, Mathias, Adediji, Adedapo O., Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Chikoti, Patrick C., Seal, Susan ORCID: 0000-0002-3952-1562 and Silva, Gonҫalo ORCID: 0000-0001-5544-2947 (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10:19633. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-020-76612-2)

myzus-persicae homoptera

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

next generation sequencing

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

Nigeria

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Seal, Susan ORCID: 0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:https://doi.org/10.1016/j.cpb.2020.100156)

Ootheca spp.

Halerimana, Charles, Kayamanywa, Samuel, Olaboro, Samuel, Paparu, Pamela, Nakalubo, Stanley T., Colvin, John, Cheke, Robert ORCID: 0000-0002-7437-1934 , Wagner, Thomas, Seal, Susan ORCID: 0000-0002-3952-1562 , Kriticos, Darren J. and Otim, Michael H. (2021) Distribution and relative abundance of bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) in Uganda. Insects (Special Issue Parasite-Insect Interactions), 12 (11):1048. pp. 1-12. ISSN 2075-4450 (Print), 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12111048)

Optimal foraging theory

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

Optimal oviposition theory

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

osmoregulation

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

PCR

Seal, Susan ORCID: 0000-0002-3952-1562 , Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:https://doi.org/10.1016/j.virusres.2014.01.007)

performance

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

pest

Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan ORCID: 0000-0002-3952-1562 , Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter (2018) Review and guide to a future naming system of African Bemisia tabaci species. Systematic Entomology, 43 (3). pp. 427-433. ISSN 0307-6970 (Print), 1365-3113 (Online) (doi:https://doi.org/10.1111/syen.12294)

pest management

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

phylogenetics

Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda ORCID: 0000-0002-8060-866X , Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan ORCID: 0000-0002-3952-1562 , Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S (2024) A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Insect Science. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.13361)

phylogenomics

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2020) Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies. Insect Science, 28 (6). pp. 1553-1566. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.12881)

plant damage

Boykin, Laura M., Kinene, Tonny, Wainaina, James M., Savill, Anders, Seal, Susan ORCID: 0000-0002-3952-1562 , Mugerwa, Habibu, Macfadyen, Sarina, Tay, Wee Tek, De Barro, Paul, Kubatko, Laura, Alicai, Titus, Omongo, Christopher A., Tairo, Fred, Ndunguru, Joseph and Sseruwagi, Peter (2018) Review and guide to a future naming system of African Bemisia tabaci species. Systematic Entomology, 43 (3). pp. 427-433. ISSN 0307-6970 (Print), 1365-3113 (Online) (doi:https://doi.org/10.1111/syen.12294)

policy

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

polyphagy

Malka, Osnat ORCID: 0000-0003-0193-377X , Feldmesser, Ester, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Santos‐Garcia, Diego ORCID: 0000-0002-3401-2662 , Han, Wen‐Hao, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John ORCID: 0000-0001-6413-580X and Morin, Shai ORCID: 0000-0003-2157-1999 (2020) The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex. Evolutionary Applications, 14 (3). pp. 807-820. ISSN 1752-4563 (Print), 1752-4571 (Online) (doi:https://doi.org/10.1111/eva.13162)

Portiera

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

positive selection

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

Potyvirus

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Kumar, Lava P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:https://doi.org/10.1016/j.ab.2018.01.019)

Monger, W.A., Harju, V., Skelton, A., Seal, Susan ORCID: 0000-0002-3952-1562 and Mumford, R.A. (2007) Brief Report: Canna yellow streak virus: a new potyvirus associated with severe streaking symptoms in canna. Archives of Virology, 152 (8). pp. 1527-1530. ISSN 0304-8608 (doi:https://doi.org/10.1007/s00705-007-0977-2)

Pseudoviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

quality control

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

quantitative real-time (QRT)-PCR

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

Quast

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

RAD-Seq

Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda ORCID: 0000-0002-8060-866X , Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan ORCID: 0000-0002-3952-1562 , Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S (2024) A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Insect Science. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.13361)

Rapid diagnostics

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Kumar, Lava P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:https://doi.org/10.1016/j.ab.2018.01.019)

reciprocal crossing

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2020) Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies. Insect Science, 28 (6). pp. 1553-1566. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.12881)

Recombinase polymerase amplification

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Kumar, Lava P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:https://doi.org/10.1016/j.ab.2018.01.019)

recombination

Seal, Susan ORCID: 0000-0002-3952-1562 , Jeger, M.J. and vandenBosch, F. (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25 (1). pp. 23-46. ISSN 0735-2689 (doi:https://doi.org/10.1080/07352680500365257)

regulation

Black, Robert ORCID: 0000-0001-6596-882X , Fava, Fabio, Mattei, Niccolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Verdier, Valerie (2011) Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4). pp. 370-381. ISSN 0168-1656 (doi:https://doi.org/10.1016/j.jbiotec.2011.06.036)

reproductive compatibility

Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda ORCID: 0000-0002-8060-866X , Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan ORCID: 0000-0002-3952-1562 , Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S (2024) A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Insect Science. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.13361)

Retroviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

Reverse-transcribing viruses

Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 , Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H. (2018) Ortervirales: A new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92 (12). 00515-00518. ISSN 0022-538X (Print), 1098-5514 (Online) (doi:https://doi.org/10.1128/JVI.00515-18)

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

rhopalosiphum-padi homoptera

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

RNA interference

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

Rolling circle amplification

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

RT-LAMP

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

RT-qPCR

Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan ORCID: 0000-0002-3952-1562 (2014) Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR. Journal of Insect Science, 14 (1):63. pp. 1-25. ISSN 1536-2442 (doi:https://doi.org/10.1673/031.014.63)

sap-feeding insect

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

seed systems

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

species complex

Seal, Susan ORCID: 0000-0002-3952-1562 , Harari, Ofer Aidlin, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020) Molecular evolution of the glutathione S-transferase family in the Bemisia tabaci species complex. Genome Biology and Evolution, 12 (2). pp. 3857-3872. ISSN 1759-6653 (Online) (doi:https://doi.org/10.1093/gbe/evaa002)

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID: 0000-0002-3952-1562 , Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:https://doi.org/10.1111/mec.14865)

spotted wilt virus

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

Sri Lankan cassava mosaic virus

Chi, Yao, Pan, Li-Long, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2019) Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 15. pp. 141-149. ISSN 0042-6822 (doi:https://doi.org/10.1016/j.virol.2019.11.013)

SSA3

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

sub-Saharan Africa species

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Wang, Hua‐Ling, Sseruwagi, Peter, Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2020) Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies. Insect Science, 28 (6). pp. 1553-1566. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.12881)

sucrase

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

superabundance

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Sseruwagi, Peter, Colvin, John and Seal, Susan ORCID: 0000-0002-3952-1562 (2021) Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species? Insects, 12 (3):260. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12030260)

Survival analysis

Vyskočilová, Soňa ORCID: 0000-0001-5296-4272 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John ORCID: 0000-0001-6413-580X (2019) Relative polyphagy of “Mediterranean” cryptic Bemisia tabaci whitefly species and global pest status implications. Journal of Pest Science, 92 (3). pp. 1071-1088. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-019-01113-9)

swollen shoot virus

Seal, Susan ORCID: 0000-0002-3952-1562 and Muller, Emanuelle (2007) Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Archives of Virology, 152 (4). pp. 819-825. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:https://doi.org/10.1007/s00705-006-0888-7)

symbiosis

Kaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan ORCID: 0000-0002-3952-1562 (2024) In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ – the Journal of Life and Environmental Sciences, 12:e16949. pp. 1-27. ISSN 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.16949)

tabaci gennadius hemiptera

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

taxonomic changes

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:https://doi.org/10.13140/RG.2.2.24914.04804)

taxonomy

Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 , Stavolone, Livia and Umber, Marie (2020) ICTV virus taxonomy profile: caulimoviridae. Journal of General Virology, 101 (10). pp. 1025-1026. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:https://doi.org/10.1099/jgv.0.001497)

TE annotation

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

The International Committee on Taxonomy of Viruses (ICTV)

Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan ORCID: 0000-0002-3952-1562 , Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H. (2018) Ortervirales: A new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92 (12). 00515-00518. ISSN 0022-538X (Print), 1098-5514 (Online) (doi:https://doi.org/10.1128/JVI.00515-18)

transcription profiling

Collins, Carl, Patel, Mitulkumar V., Colvin, John, Bailey, David and Seal, Susan ORCID: 0000-0002-3952-1562 (2014) Identification and evaluation of suitable reference genes for gene expression studies in the whitefly Bemisia tabaci (Asia I) by reverse transcription quantitative realtime PCR. Journal of Insect Science, 14 (1):63. pp. 1-25. ISSN 1536-2442 (doi:https://doi.org/10.1673/031.014.63)

transcriptome

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

transcriptome assembly

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

transposable elements

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

transposons

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Kaweesi, Tadeo, Seal, Susan ORCID: 0000-0002-3952-1562 , Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID: 0000-0002-8060-866X , Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:https://doi.org/10.1186/s12864-023-09474-3)

Trimmomatic

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

trinity

Sewe, Steven, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Sicat, Juan Paolo, Seal, Susan ORCID: 0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:https://doi.org/10.1007/978-1-0716-2067-0_11)

Uganda

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

virus

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Seal, Susan ORCID: 0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:https://doi.org/10.1016/j.cpb.2020.100156)

virus diagnostics

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

Virus transmission

Chi, Yao, Pan, Li-Long, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 , Fan, Yun-Yun, Liu, Yin-Quan, Liu, Shu-Sheng, Seal, Susan ORCID: 0000-0002-3952-1562 and Wang, Xiao-Wei (2019) Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 15. pp. 141-149. ISSN 0042-6822 (doi:https://doi.org/10.1016/j.virol.2019.11.013)

West Africa

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

whiteflies

Wang, Hualing, Lei, T, Wang, X-O, Cameron, S, Navas-Castillo, J, Liu, Y-Q, Maruthi, Midatharahally Narasegowda ORCID: 0000-0002-8060-866X , Omongo, C, Delatte, H, Lee, K-Y, Krause-Sakate, R, Ng, J, Seal, Susan ORCID: 0000-0002-3952-1562 , Fiallo-Olivé, E, Bushley, K, Colvin, John and Liu, S-S (2024) A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Insect Science. ISSN 1672-9609 (Print), 1744-7917 (Online) (doi:https://doi.org/10.1111/1744-7917.13361)

whitefly

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: 0000-0002-0788-3243 and Seal, Susan ORCID: 0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:https://doi.org/10.1186/s13100-022-00270-6)

Bao, Xi-Yu, Yan, Jin-Yang, Ya-Lin Yao, Ya-Lin Yao, Yan-Bin Wang, Yan-Bin Wang, Visendi, Paull, Seal, Susan ORCID: 0000-0002-3952-1562 and Luan, Jun-Bo (2021) Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11):e1010120. ISSN 1553-7366 (Print), 1553-7374 (Online) (doi:https://doi.org/10.1371/journal.ppat.1010120)

Mugerwa, Habibu ORCID: 0000-0001-5077-0167 , Sseruwagi, Peter, Colvin, John and Seal, Susan ORCID: 0000-0002-3952-1562 (2021) Is high whitefly abundance on cassava in sub-Saharan Africa driven by biological traits of a specific, cryptic Bemisia tabaci species? Insects, 12 (3):260. ISSN 2075-4450 (Online) (doi:https://doi.org/10.3390/insects12030260)

Seal, Susan ORCID: 0000-0002-3952-1562 , Patel, Mitulkumar V., Collins, Carl, Colvin, John and Bailey, David (2012) Next generation transcriptome sequencing and quantitative real-time PCR technologies for characterisation of the Bemisia tabaci Asia 1 mtCOI phylogenetic clade. Journal of Integrative Agriculture, 11 (2). pp. 281-292. ISSN 2095-3119 (doi:https://doi.org/10.1016/S2095-3119(12)60012-4)

Whitefly complex

Vyskočilová, Soňa, Tay, Wee Tek, van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Seal, Susan ORCID: 0000-0002-3952-1562 and Colvin, John (2018) An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex. Scientific Reports, 8:10886. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-29305-w)

whitefly species

Namuddu, Annet, Seal, Susan ORCID: 0000-0002-3952-1562 , van Brunschot, Sharon ORCID: 0000-0002-9634-9463 , Malka, Osnat, Kabaalu, Richard, Morin, Shai, Omongo, Christopher and Colvin, John (2023) Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas. Frontiers in Sustainable Food Systems, 7:106810. pp. 1-15. ISSN 2571-581X (Online) (doi:https://doi.org/10.3389/fsufs.2023.1068109)

whitefly-transmitted geminiviruses

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

yam

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

Diouf, Mame Boucar, Festus, Ruth, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Guyader, Sébastien, Umber, Marie, Seal, Susan ORCID: 0000-0002-3952-1562 and Teycheney, Pierre Yves (2022) Viruses of yams (Dioscorea spp.): current gaps in knowledge and future research directions to improve disease management. Viruses, 14 (9):1884. pp. 1-23. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v14091884)

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Bömer, Moritz ORCID: 0000-0003-1003-9622 , Seal, Susan ORCID: 0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:https://doi.org/10.1016/j.cpb.2020.100156)

Silva, Gonçalo ORCID: 0000-0001-5544-2947 , Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: 0000-0003-1003-9622 , Kumar, Lava P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:https://doi.org/10.1016/j.ab.2018.01.019)

Bömer, Moritz ORCID: 0000-0003-1003-9622 , Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: 0000-0001-5544-2947 , Lava Kumar, P. and Seal, Susan ORCID: 0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:https://doi.org/10.21769/BioProtoc.2672)

Yam mosaic virus

Festus, Ruth, Seal, Susan ORCID: 0000-0002-3952-1562 , Prempeh, Ruth, Quain, Marian D. and Silva, Goncalo ORCID: 0000-0001-5544-2947 (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the rapid and sensitive detection of Yam mosaic virus. Viruses, 15 (7):1592. pp. 1-17. ISSN 1999-4915 (Online) (doi:https://doi.org/10.3390/v15071592)

yellow-dwarf-virus

Colvin, John, Omongo, C.A., Govindappa, M.R., Stevenson, Philip C. ORCID: 0000-0002-0736-3619 , Maruthi, M.N. ORCID: 0000-0002-8060-866X , Gibson, Gabriella, Seal, Susan ORCID: 0000-0002-3952-1562 and Muniyappa, V. (2006) Host-plant viral infection effects on arthropod-vector population growth, development and behaviour: management and epidemiological implications. In: Maramorosch, Karl, Shatkin, Aaron J. and Thresh, J.M., (eds.) Plant Virus Epidemiology. Advances in Virus Research, 67 . Academic Press / Elsevier B.V., Amsterdam, The Netherlands, pp. 419-452. ISBN 978-0-12-039866-9 (ISBN-13) 0-12-039866-4 (ISBN-10) ISSN 0065-3527 (doi:https://doi.org/10.1016/S0065-3527(06)67011-5 (for book section))

This list was generated on Fri Apr 26 20:02:22 2024 UTC.