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HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein

HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein

Grasser, Klaus D., Grill, Simon, Duroux, Meg, Launholt, Dorte, Thomsen, Maline S., Nielsen, Birthe V., Nielsen, Hanne K. and Merkle, Thomas (2004) HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein. Biochemistry, 43 (5). pp. 1309-1314. ISSN 0006-2960 (Print), 1520-4995 (Online) (doi:10.1021/bi035931c)

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Abstract

The high-mobility group (HMG) proteins of the HMGB family are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination. Database analyses revealed that in addition to the previously identified HMGB1−HMGB5 proteins, the Arabidopsis genome encodes at least three other family members having the typical overall structure of a central HMG-box DNA binding domain, which is flanked by basic and acidic regions. These novel HMGB proteins display some structural differences, when compared to HMGB1−HMGB5. Therefore, a representative of the identified proteins, now termed HMGB6, was further analyzed. The HMGB6 protein of 27 kDa is the largest plant HMGB protein identified so far. This is essentially due to its unusually extended N-terminal domain of 109 amino acid residues. Subcellular localization experiments demonstrate that it is a nuclear protein. According to CD measurements, HMGB6 has an α-helical HMG-box domain. HMGB6 can bind DNA structure-specifically, and it is a substrate for the protein kinase CK2α. Because of these features, HMGB6, and presumably its relatives, can be considered members of the plant HMGB protein family. Hence, eight different chromosomal HMGB proteins are expressed in Arabidopsis, and they may serve specialized architectural functions assisting various DNA-dependent processes.

Item Type: Article
Uncontrolled Keywords: mobility-group proteins, cisplatin-modified dna, pea plastocyanin gene, kinase ck2, intercalating residues, architectural elements, phosphorylation sites, binding proteins, i/y binding, maize
Subjects: Q Science > Q Science (General)
Q Science > QD Chemistry
Q Science > QH Natural history > QH301 Biology
Faculty / Department / Research Group: Faculty of Engineering & Science
Faculty of Engineering & Science > Department of Pharmaceutical, Chemical & Environmental Sciences
Related URLs:
Last Modified: 17 Oct 2016 09:10
Selected for GREAT 2016: None
Selected for GREAT 2017: None
Selected for GREAT 2018: None
URI: http://gala.gre.ac.uk/id/eprint/3662

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