autism

Loth, Eva, Ahmad, Jumana ORCID: https://orcid.org/0000-0001-5271-0731, Chatham, Chris, López, Beatriz, Carter, Ben, Crawley, Daisy, Oakley, Bethany, Hayward, Hannah, Cooke, Jennifer, San José Cáceres, Antonia, Bzdok, Danilo, Jones, Emily, Charman, Tony, Beckmann, Christian, Bourgeron, Thomas, Toro, Roberto, Buitelaar, Jan, Murphy, Declan and Dumas, Guillaume (2021) The meaning of significant mean group differences for biomarker discovery. PLoS Computational Biology, 17 (11):e1009477. pp. 1-16. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009477)

behavioral changes

Gozzi, Nicolo, Bajardi, Paolo and Perra, Nicola ORCID: https://orcid.org/0000-0002-5559-3064 (2021) The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout. PLoS Computational Biology, 17 (9):e1009346. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009346)

Gozzi, Nicolo, Perrotta, Daniela, Paolotti, Daniela and Perra, Perra ORCID: https://orcid.org/0000-0002-5559-3064 (2020) Towards a data-driven characterization of behavioral changes induced by the seasonal flu. PLoS Computational Biology, 16 (5):e1007879. ISSN 1553-734X (doi:10.1371/journal.pcbi.1007879)

computational modelling

Torok, Balazs, Nagy, David, Kiss, Mariann, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220, Nemeth, Dezso and Orban, Gergo (2022) Tracking the contribution of inductive bias to individualised internal models. PLoS Computational Biology, 18 (6):e1010182. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1010182)

COVID-19

Gozzi, Nicolo, Bajardi, Paolo and Perra, Nicola ORCID: https://orcid.org/0000-0002-5559-3064 (2021) The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout. PLoS Computational Biology, 17 (9):e1009346. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009346)

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

Digital Epidemiology

Gozzi, Nicolo, Perrotta, Daniela, Paolotti, Daniela and Perra, Perra ORCID: https://orcid.org/0000-0002-5559-3064 (2020) Towards a data-driven characterization of behavioral changes induced by the seasonal flu. PLoS Computational Biology, 16 (5):e1007879. ISSN 1553-734X (doi:10.1371/journal.pcbi.1007879)

epidemic modeling

Rocha, Luis E. C. ORCID: https://orcid.org/0000-0001-9046-8739, Liljeros, Fredrik and Holme, Petter (2011) Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts. PLoS Computational Biology, 7 (3):e1001109. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1001109)

epidemic modelling

Rocha, Luis E. C. ORCID: https://orcid.org/0000-0001-9046-8739 and Blondel, Vincent (2013) Bursts of vertex activation and epidemics in evolving networks. PLoS Computational Biology, 9 (3):e1002974. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1002974)

epidemiology

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

heterogeneity

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

hidden markov models

Torok, Balazs, Nagy, David, Kiss, Mariann, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220, Nemeth, Dezso and Orban, Gergo (2022) Tracking the contribution of inductive bias to individualised internal models. PLoS Computational Biology, 18 (6):e1010182. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1010182)

hierarchical Bayesian model

Elteto, N, Nemeth, D, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220 and Dayan, P (2022) Tracking human skill learning with a hierarchical Bayesian sequence model. PLoS Computational Biology, 18 (11):e100. pp. 1-28. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009866)

implicit learning

Torok, Balazs, Nagy, David, Kiss, Mariann, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220, Nemeth, Dezso and Orban, Gergo (2022) Tracking the contribution of inductive bias to individualised internal models. PLoS Computational Biology, 18 (6):e1010182. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1010182)

individual predictions

Elteto, N, Nemeth, D, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220 and Dayan, P (2022) Tracking human skill learning with a hierarchical Bayesian sequence model. PLoS Computational Biology, 18 (11):e100. pp. 1-28. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009866)

internal model

Elteto, N, Nemeth, D, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220 and Dayan, P (2022) Tracking human skill learning with a hierarchical Bayesian sequence model. PLoS Computational Biology, 18 (11):e100. pp. 1-28. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009866)

internal models

Torok, Balazs, Nagy, David, Kiss, Mariann, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220, Nemeth, Dezso and Orban, Gergo (2022) Tracking the contribution of inductive bias to individualised internal models. PLoS Computational Biology, 18 (6):e1010182. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1010182)

machine learning

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

mean group differences

Loth, Eva, Ahmad, Jumana ORCID: https://orcid.org/0000-0001-5271-0731, Chatham, Chris, López, Beatriz, Carter, Ben, Crawley, Daisy, Oakley, Bethany, Hayward, Hannah, Cooke, Jennifer, San José Cáceres, Antonia, Bzdok, Danilo, Jones, Emily, Charman, Tony, Beckmann, Christian, Bourgeron, Thomas, Toro, Roberto, Buitelaar, Jan, Murphy, Declan and Dumas, Guillaume (2021) The meaning of significant mean group differences for biomarker discovery. PLoS Computational Biology, 17 (11):e1009477. pp. 1-16. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009477)

model

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

network science

Rocha, Luis E. C. ORCID: https://orcid.org/0000-0001-9046-8739, Liljeros, Fredrik and Holme, Petter (2011) Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts. PLoS Computational Biology, 7 (3):e1001109. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1001109)

neural network

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

probabilistic sequence learning

Torok, Balazs, Nagy, David, Kiss, Mariann, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220, Nemeth, Dezso and Orban, Gergo (2022) Tracking the contribution of inductive bias to individualised internal models. PLoS Computational Biology, 18 (6):e1010182. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1010182)

sequence learning

Elteto, N, Nemeth, D, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220 and Dayan, P (2022) Tracking human skill learning with a hierarchical Bayesian sequence model. PLoS Computational Biology, 18 (11):e100. pp. 1-28. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009866)

Shanghai

Tang, Biao, Ma, Kexin, Liu, Yan, Wang, Xia, Tang, Sanyi, Xiao, Yanni and Cheke, Robert ORCID: https://orcid.org/0000-0002-7437-1934 (2024) Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: a mechanistic and deep learning study. PLoS Computational Biology, 20 (9):e1012497. ISSN 1553-734X (doi:10.1371/journal.pcbi.1012497)

simulations

Rocha, Luis E. C. ORCID: https://orcid.org/0000-0001-9046-8739 and Blondel, Vincent (2013) Bursts of vertex activation and epidemics in evolving networks. PLoS Computational Biology, 9 (3):e1002974. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1002974)

Rocha, Luis E. C. ORCID: https://orcid.org/0000-0001-9046-8739, Liljeros, Fredrik and Holme, Petter (2011) Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts. PLoS Computational Biology, 7 (3):e1001109. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1001109)

skill learning

Elteto, N, Nemeth, D, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220 and Dayan, P (2022) Tracking human skill learning with a hierarchical Bayesian sequence model. PLoS Computational Biology, 18 (11):e100. pp. 1-28. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009866)

statistical learning

Torok, Balazs, Nagy, David, Kiss, Mariann, Janacsek, Karolina ORCID: https://orcid.org/0000-0001-7829-8220, Nemeth, Dezso and Orban, Gergo (2022) Tracking the contribution of inductive bias to individualised internal models. PLoS Computational Biology, 18 (6):e1010182. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1010182)

temporal network

Rocha, Luis E. C. ORCID: https://orcid.org/0000-0001-9046-8739 and Blondel, Vincent (2013) Bursts of vertex activation and epidemics in evolving networks. PLoS Computational Biology, 9 (3):e1002974. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1002974)

vaccines

Gozzi, Nicolo, Bajardi, Paolo and Perra, Nicola ORCID: https://orcid.org/0000-0002-5559-3064 (2021) The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout. PLoS Computational Biology, 17 (9):e1009346. ISSN 1553-734X (Print), 1553-7358 (Online) (doi:10.1371/journal.pcbi.1009346)