apple black spot

Passey, Thomas A. J. ORCID: 0000-0002-5678-2481 , Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Shaw, Michael W. ORCID: 0000-0002-6993-048X and Xu, Xiangming ORCID: 0000-0002-4567-7117 (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/ppa.13150)

apple scab

Passey, Thomas A. J. ORCID: 0000-0002-5678-2481 , Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Shaw, Michael W. ORCID: 0000-0002-6993-048X and Xu, Xiangming ORCID: 0000-0002-4567-7117 (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/ppa.13150)

ascospore production

Passey, Thomas A. J. ORCID: 0000-0002-5678-2481 , Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Shaw, Michael W. ORCID: 0000-0002-6993-048X and Xu, Xiangming ORCID: 0000-0002-4567-7117 (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/ppa.13150)

effector genes

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

Fusarium basal rot

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

Fusarium oxysporum f. sp. cepae

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

host mixture

Passey, Thomas A. J. ORCID: 0000-0002-5678-2481 , Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Shaw, Michael W. ORCID: 0000-0002-6993-048X and Xu, Xiangming ORCID: 0000-0002-4567-7117 (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/ppa.13150)

host–microbe interactions

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

nanopore sequencing

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

onion

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

oomycete

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

pathogenicity

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

population resequencing

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

race structure

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

red core

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

RNA-Seq

Adams, Thomas M., Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)

secreted in xylem (SIX)

Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura ORCID: 0000-0003-3287-7547 , Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. ORCID: 0000-0002-3307-3519 and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)

super-race

Passey, Thomas A. J. ORCID: 0000-0002-5678-2481 , Armitage, Andrew D. ORCID: 0000-0002-0610-763X , Sobczyk, Maria K., Shaw, Michael W. ORCID: 0000-0002-6993-048X and Xu, Xiangming ORCID: 0000-0002-4567-7117 (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/ppa.13150)