Badnavirus

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Betaflexiviridae

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

Biotransformation

Martins, Mónica, Assunção, Ana, Neto, André, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Sghaier, Haïtham and Costa, Maria Clara (2016) Performance and bacterial community shifts during phosphogypsum biotransformation. Water, Air, & Soil Pollution, 227 (12):437. pp. 1-10. ISSN 0049-6979 (Print), 1573-2932 (Online) (doi:10.1007/s11270-016-3129-z)

Citrus tristeza virus (CTV)

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Marques, Natália and Nolasco, Gustavo (2011) The evolutionary rate of citrus tristeza virus ranks among the rates of the slowest RNA viruses. Journal of General Virology, 93 (2). pp. 419-429. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:10.1099/vir.0.036574-0)

closed‑tube reverse transcription loop‑mediated isothermal amplification (CT-RT-LAMP)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Closterovirus

Marques, Natália T., Costa, Ângela A., Lopes, Débora, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Nolasco, Gustavo (2012) Comparing p20’s RNA silencing suppressing activity among five phylogenetic groups of Citrus Tristeza virus. European Journal of Plant Pathology, 133 (1). pp. 229-235. ISSN 0929-1873 (Print), 1573-8469 (Online) (doi:10.1007/s10658-011-9877-0)

Complete genome

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Denaturing gradient gel electrophoresis (DGGE)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Detection

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

diagnosis

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

diagnostic assay

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

diagnostics

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Dioscorea

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Dioscorea rotundata

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Dioscorea spp.

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:10.1016/j.cpb.2020.100156)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

Endogenous Dioscorea bacilliform virus

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

endogenous pararetrovirus

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Endogenous pararetrovirus (EPRV)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Episomal badnavirus

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

GFP

Marques, Natália T., Costa, Ângela A., Lopes, Débora, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Nolasco, Gustavo (2012) Comparing p20’s RNA silencing suppressing activity among five phylogenetic groups of Citrus Tristeza virus. European Journal of Plant Pathology, 133 (1). pp. 229-235. ISSN 0929-1873 (Print), 1573-8469 (Online) (doi:10.1007/s10658-011-9877-0)

Ghana

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:10.1016/j.cpb.2020.100156)

HTS

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

In vitro culture

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Integration

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Isothermal amplification

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Kumar, Lava P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:10.1016/j.ab.2018.01.019)

next-generation sequencing

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

Nigeria

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:10.1016/j.cpb.2020.100156)

p21-like

Marques, Natália T., Costa, Ângela A., Lopes, Débora, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Nolasco, Gustavo (2012) Comparing p20’s RNA silencing suppressing activity among five phylogenetic groups of Citrus Tristeza virus. European Journal of Plant Pathology, 133 (1). pp. 229-235. ISSN 0929-1873 (Print), 1573-8469 (Online) (doi:10.1007/s10658-011-9877-0)

Phosphogypsum

Martins, Mónica, Assunção, Ana, Neto, André, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Sghaier, Haïtham and Costa, Maria Clara (2016) Performance and bacterial community shifts during phosphogypsum biotransformation. Water, Air, & Soil Pollution, 227 (12):437. pp. 1-10. ISSN 0049-6979 (Print), 1573-2932 (Online) (doi:10.1007/s11270-016-3129-z)

Phylogenetic characterization

Martins, Mónica, Assunção, Ana, Neto, André, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Sghaier, Haïtham and Costa, Maria Clara (2016) Performance and bacterial community shifts during phosphogypsum biotransformation. Water, Air, & Soil Pollution, 227 (12):437. pp. 1-10. ISSN 0049-6979 (Print), 1573-2932 (Online) (doi:10.1007/s11270-016-3129-z)

Phylogeny

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Potyvirus

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Kumar, Lava P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:10.1016/j.ab.2018.01.019)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Rapid diagnostics

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Kumar, Lava P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:10.1016/j.ab.2018.01.019)

Recombinase polymerase amplification

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Kumar, Lava P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:10.1016/j.ab.2018.01.019)

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

Recombination

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

RNA silencing suppressor

Marques, Natália T., Costa, Ângela A., Lopes, Débora, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Nolasco, Gustavo (2012) Comparing p20’s RNA silencing suppressing activity among five phylogenetic groups of Citrus Tristeza virus. European Journal of Plant Pathology, 133 (1). pp. 229-235. ISSN 0929-1873 (Print), 1573-8469 (Online) (doi:10.1007/s10658-011-9877-0)

RNA-Seq

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

rolling circle amplification

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Sequence diversity

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Sub-Saharan Africa

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Sulfate-reducing bacteria

Martins, Mónica, Assunção, Ana, Neto, André, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Sghaier, Haïtham and Costa, Maria Clara (2016) Performance and bacterial community shifts during phosphogypsum biotransformation. Water, Air, & Soil Pollution, 227 (12):437. pp. 1-10. ISSN 0049-6979 (Print), 1573-2932 (Online) (doi:10.1007/s11270-016-3129-z)

Virus

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:10.1016/j.cpb.2020.100156)

virus detection

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

VSR

Marques, Natália T., Costa, Ângela A., Lopes, Débora, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Nolasco, Gustavo (2012) Comparing p20’s RNA silencing suppressing activity among five phylogenetic groups of Citrus Tristeza virus. European Journal of Plant Pathology, 133 (1). pp. 229-235. ISSN 0929-1873 (Print), 1573-8469 (Online) (doi:10.1007/s10658-011-9877-0)

West Africa

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Yam

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:10.1016/j.cpb.2020.100156)

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Kumar, Lava P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:10.1016/j.ab.2018.01.019)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

Yam mosaic virus

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

YMV

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)