Items where Author is "Sewe, Steven"

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Bemisia tabaci bioinformatics Busco DNA transposons Fastqc Illumina adapters quality control Quast TE annotation transcriptome assembly transposable elements Trimmomatic trinity whitefly

Number of items: 14.

Bemisia tabaci

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: https://orcid.org/0000-0002-0788-3243 and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:10.1186/s13100-022-00270-6)

bioinformatics

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: https://orcid.org/0000-0002-0788-3243 and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:10.1186/s13100-022-00270-6)

Busco

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

DNA transposons

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: https://orcid.org/0000-0002-0788-3243 and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:10.1186/s13100-022-00270-6)

Fastqc

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

Illumina adapters

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

quality control

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

Quast

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

TE annotation

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: https://orcid.org/0000-0002-0788-3243 and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:10.1186/s13100-022-00270-6)

transcriptome assembly

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

transposable elements

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: https://orcid.org/0000-0002-0788-3243 and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:10.1186/s13100-022-00270-6)

Trimmomatic

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

trinity

Sewe, Steven, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

whitefly

Sicat, Juan Paolo A., Visendi, Paul, Sewe, Steven, Bouvaine, Sophie ORCID: https://orcid.org/0000-0002-0788-3243 and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (12). ISSN 1759-8753 (Online) (doi:10.1186/s13100-022-00270-6)

This list was generated on Sun Dec 22 13:26:24 2024 UTC.