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Items where Author is "Muhindira, Paul Visendi"

Items where Author is "Muhindira, Paul Visendi"

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Bemisia tabaci biological species Busco cladogenesis comparative genomics Diet breadth Diversification endosymbiont Fastqc genome assembly horizontal genes Host adaptation Illumina adapters Insect‐plant interactions phylogenomics quality control Quast Species complex transcriptome assembly transposons Trimmomatic trinity
Number of items: 22.

Bemisia tabaci

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:10.1111/mec.14865)

biological species

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

Busco

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

cladogenesis

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

comparative genomics

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

Diet breadth

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:10.1111/mec.14865)

Diversification

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:10.1111/mec.14865)

endosymbiont

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

Fastqc

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

genome assembly

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

horizontal genes

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

Host adaptation

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:10.1111/mec.14865)

Illumina adapters

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

Insect‐plant interactions

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:10.1111/mec.14865)

phylogenomics

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

quality control

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

Quast

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

Species complex

Malka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Patel, Mitulkumar, Muhindira, Paul Visendi, Mugerwa, Habibu, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Colvin, John and Morin, Shai (2018) Species-complex diversification and host-plant associations in Bemisia tabaci : a plant-defense, detoxification perspective revealed by RNAseq analyses. Molecular Ecology, 27 (21). pp. 4241-4256. ISSN 0962-1083 (Print), 1365-294X (Online) (doi:10.1111/mec.14865)

transcriptome assembly

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

transposons

Campbell, Lahcen, Nwezeobi, Joachim, van Brunschot, Sharon ORCID logoORCID: https://orcid.org/0000-0002-9634-9463, Kaweesi, Tadeo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Swamy, Rekha, Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X, Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023) Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24:408. ISSN 1471-2164 (Online) (doi:10.1186/s12864-023-09474-3)

Trimmomatic

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

trinity

Sewe, Steven, Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Sicat, Juan Paolo, Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 and Muhindira, Paul Visendi (2022) Trimming and validation of Illumina short reads using Trimmomatic, trinity assembly, and assessment of RNA-Seq Data. In: Edwards, David, (ed.) Plant Bioinformatics. Methods in Molecular Biology. Springer Protocols, 2443 . Humana Press - Springer Nature, New York, United States, pp. 211-232. ISBN 978-1071620663 ; 978-1071620670 (doi:10.1007/978-1-0716-2067-0_11)

This list was generated on Sun Dec 22 13:53:44 2024 UTC.