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Items where Author is "Kumar, P. Lava"

Items where Author is "Kumar, P. Lava"

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Africa badnavirus Betaflexiviridae cassava CBSVs closed‑tube reverse transcription loop‑mediated isothermal amplification (CT-RT-LAMP) CMBs duplex and multiplex RT-PC denaturing gradient gel electrophoresis (DGGE) Detection diagnosis diagnostic assay diagnostics Dioscorea Dioscorea spp. Dioscorea yam ELISA endogenous badnaviral elements endogenous pararetrovirus Endogenous pararetrovirus (EPRV) Endogenous pararetroviruses Episomal badnavirus HTS Immunosorbent electron microscopy In vitro culture Integration multiplex PCR next-generation sequencing PCR Potyvirus recombinase polymerase amplification RNA-Seq rolling circle amplification Sequence diversity Sub-Saharan Africa virus detection West Africa yam Yam mosaic virus YMV
Number of items: 55.

Africa

Abarshi, M.M., Mohammed, I.U., Jeremiah, S.C., Legg, J.P., Kumar, P. Lava, Hillocks, R.J. and Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X (2011) Multiplex RT-PCR assays for the simultaneous detection of both RNA and DNA viruses infecting cassava and the common occurrence of mixed infections by two cassava brown streak viruses in East Africa. Journal of Virological Methods, 179 (1). pp. 176-184. ISSN 0166-0934 (doi:10.1016/j.jviromet.2011.10.020)

badnavirus

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:10.1016/j.virusres.2014.01.007)

Betaflexiviridae

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

cassava

Abarshi, M.M., Mohammed, I.U., Jeremiah, S.C., Legg, J.P., Kumar, P. Lava, Hillocks, R.J. and Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X (2011) Multiplex RT-PCR assays for the simultaneous detection of both RNA and DNA viruses infecting cassava and the common occurrence of mixed infections by two cassava brown streak viruses in East Africa. Journal of Virological Methods, 179 (1). pp. 176-184. ISSN 0166-0934 (doi:10.1016/j.jviromet.2011.10.020)

CBSVs

Abarshi, M.M., Mohammed, I.U., Jeremiah, S.C., Legg, J.P., Kumar, P. Lava, Hillocks, R.J. and Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X (2011) Multiplex RT-PCR assays for the simultaneous detection of both RNA and DNA viruses infecting cassava and the common occurrence of mixed infections by two cassava brown streak viruses in East Africa. Journal of Virological Methods, 179 (1). pp. 176-184. ISSN 0166-0934 (doi:10.1016/j.jviromet.2011.10.020)

closed‑tube reverse transcription loop‑mediated isothermal amplification (CT-RT-LAMP)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

CMBs duplex and multiplex RT-PC

Abarshi, M.M., Mohammed, I.U., Jeremiah, S.C., Legg, J.P., Kumar, P. Lava, Hillocks, R.J. and Maruthi, M.N. ORCID logoORCID: https://orcid.org/0000-0002-8060-866X (2011) Multiplex RT-PCR assays for the simultaneous detection of both RNA and DNA viruses infecting cassava and the common occurrence of mixed infections by two cassava brown streak viruses in East Africa. Journal of Virological Methods, 179 (1). pp. 176-184. ISSN 0166-0934 (doi:10.1016/j.jviromet.2011.10.020)

denaturing gradient gel electrophoresis (DGGE)

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Detection

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

diagnosis

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

diagnostic assay

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

diagnostics

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Dioscorea

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Dioscorea spp.

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

Dioscorea yam

Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:10.1016/j.virusres.2014.01.007)

ELISA

Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:10.1016/j.virusres.2014.01.007)

endogenous badnaviral elements

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

endogenous pararetrovirus

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Endogenous pararetrovirus (EPRV)

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Endogenous pararetroviruses

Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:10.1016/j.virusres.2014.01.007)

Episomal badnavirus

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

HTS

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

Immunosorbent electron microscopy

Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:10.1016/j.virusres.2014.01.007)

In vitro culture

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Integration

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

multiplex PCR

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

next-generation sequencing

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

PCR

Seal, Susan ORCID logoORCID: https://orcid.org/0000-0002-3952-1562, Turaki, Aliyu, Muller, Emmanuelle, Kumar, P. Lava, Kenyon, Lawrence, Filloux, Denis, Galzi, Serge, Lopez-Montes, Antonio and Iskra-Caruana, Marie-Line (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Research, 186. pp. 144-154. ISSN 0168-1702 (Print), 1872-7492 (Online) (doi:10.1016/j.virusres.2014.01.007)

Potyvirus

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

recombinase polymerase amplification

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

RNA-Seq

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

rolling circle amplification

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Sequence diversity

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Sub-Saharan Africa

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

virus detection

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

West Africa

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

yam

Silva, Goncalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Turaki, Aliyu A., Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

Yam mosaic virus

Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

YMV

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

Silva, Gonçalo ORCID logoORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID logoORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID logoORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

This list was generated on Sun Dec 22 14:04:58 2024 UTC.