Africa

Patil, Basavaprabu L., Ogwok, Emmanuel, Wagaba, Henry, Mohammed, Ibrahim U., Yadav, Jitender S., Bagewadi, Basavaraj, Taylor, Nigel J., Kreuze, Jan F., Maruthi, M.N. ORCID: https://orcid.org/0000-0002-8060-866X, Alicai, Titus and Fauquet, Claude M. (2010) RNAi-mediated resistance to diverse isolates belonging to two virus species involved in Cassava brown streak disease. Molecular Plant Pathology, 12 (1). pp. 31-41. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:10.1111/j.1364-3703.2010.00650.x)

aphid-transmitted potyvirus

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

bioinformatics

Kutnjak, Denis, Tamisier, Lucie, Adams, Ian, Boonham, Neil, Candresse, Thierry, Chiumenti, Michela, De Jonghe, Kris, Kreuze, Jan F., Lefebvre, Marie, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Malapi-Wight, Martha, Margaria, Paolo, Mavric Pleško, Irena, McGreig, Sam, Miozzi, Laura, Remenant, Benoit, Reynard, Jean-Sebastien, Rollin, Johan, Rott, Mike, Schumpp, Olivier, Massart, Sébastien and Haegeman, Annelies (2021) A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms, 9 (4):841. ISSN 2076-2607 (Online) (doi:10.3390/microorganisms9040841)

cassava

Patil, Basavaprabu L., Ogwok, Emmanuel, Wagaba, Henry, Mohammed, Ibrahim U., Yadav, Jitender S., Bagewadi, Basavaraj, Taylor, Nigel J., Kreuze, Jan F., Maruthi, M.N. ORCID: https://orcid.org/0000-0002-8060-866X, Alicai, Titus and Fauquet, Claude M. (2010) RNAi-mediated resistance to diverse isolates belonging to two virus species involved in Cassava brown streak disease. Molecular Plant Pathology, 12 (1). pp. 31-41. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:10.1111/j.1364-3703.2010.00650.x)

detection

Kutnjak, Denis, Tamisier, Lucie, Adams, Ian, Boonham, Neil, Candresse, Thierry, Chiumenti, Michela, De Jonghe, Kris, Kreuze, Jan F., Lefebvre, Marie, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Malapi-Wight, Martha, Margaria, Paolo, Mavric Pleško, Irena, McGreig, Sam, Miozzi, Laura, Remenant, Benoit, Reynard, Jean-Sebastien, Rollin, Johan, Rott, Mike, Schumpp, Olivier, Massart, Sébastien and Haegeman, Annelies (2021) A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms, 9 (4):841. ISSN 2076-2607 (Online) (doi:10.3390/microorganisms9040841)

discovery

Kutnjak, Denis, Tamisier, Lucie, Adams, Ian, Boonham, Neil, Candresse, Thierry, Chiumenti, Michela, De Jonghe, Kris, Kreuze, Jan F., Lefebvre, Marie, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Malapi-Wight, Martha, Margaria, Paolo, Mavric Pleško, Irena, McGreig, Sam, Miozzi, Laura, Remenant, Benoit, Reynard, Jean-Sebastien, Rollin, Johan, Rott, Mike, Schumpp, Olivier, Massart, Sébastien and Haegeman, Annelies (2021) A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms, 9 (4):841. ISSN 2076-2607 (Online) (doi:10.3390/microorganisms9040841)

East Africa

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

five families: Caulimoviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

health benefits

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

Hepadnaviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

high-throughput sequencing

Kutnjak, Denis, Tamisier, Lucie, Adams, Ian, Boonham, Neil, Candresse, Thierry, Chiumenti, Michela, De Jonghe, Kris, Kreuze, Jan F., Lefebvre, Marie, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Malapi-Wight, Martha, Margaria, Paolo, Mavric Pleško, Irena, McGreig, Sam, Miozzi, Laura, Remenant, Benoit, Reynard, Jean-Sebastien, Rollin, Johan, Rott, Mike, Schumpp, Olivier, Massart, Sébastien and Haegeman, Annelies (2021) A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms, 9 (4):841. ISSN 2076-2607 (Online) (doi:10.3390/microorganisms9040841)

ICTV report and caulimoviridae

Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562, Stavolone, Livia and Umber, Marie (2020) ICTV virus taxonomy profile: caulimoviridae. Journal of General Virology, 101 (10). pp. 1025-1026. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:10.1099/jgv.0.001497)

management programs

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

Metaviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

orange-fleshed cultivars

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

plant virus

Kutnjak, Denis, Tamisier, Lucie, Adams, Ian, Boonham, Neil, Candresse, Thierry, Chiumenti, Michela, De Jonghe, Kris, Kreuze, Jan F., Lefebvre, Marie, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Malapi-Wight, Martha, Margaria, Paolo, Mavric Pleško, Irena, McGreig, Sam, Miozzi, Laura, Remenant, Benoit, Reynard, Jean-Sebastien, Rollin, Johan, Rott, Mike, Schumpp, Olivier, Massart, Sébastien and Haegeman, Annelies (2021) A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms, 9 (4):841. ISSN 2076-2607 (Online) (doi:10.3390/microorganisms9040841)

Pseudoviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

Retroviridae

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

Reverse-transcribing viruses

Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562, Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H. (2018) Ortervirales: A new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92 (12). 00515-00518. ISSN 0022-538X (Print), 1098-5514 (Online) (doi:10.1128/JVI.00515-18)

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

staple food

Patil, Basavaprabu L., Ogwok, Emmanuel, Wagaba, Henry, Mohammed, Ibrahim U., Yadav, Jitender S., Bagewadi, Basavaraj, Taylor, Nigel J., Kreuze, Jan F., Maruthi, M.N. ORCID: https://orcid.org/0000-0002-8060-866X, Alicai, Titus and Fauquet, Claude M. (2010) RNAi-mediated resistance to diverse isolates belonging to two virus species involved in Cassava brown streak disease. Molecular Plant Pathology, 12 (1). pp. 31-41. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:10.1111/j.1364-3703.2010.00650.x)

Sweetpotato

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

sweetpotato virus disease

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

taxonomic changes

Krupovic, Mart, Harrach, Balázs, Sabanadzovic, Sead, Sanfaçon, Hélène, Koonin, Eugene V., Kuhn, Jens H., Johnson, Welkin, Blomberg, Jonas, Coffin, John, Fan, Hung, Gifford, Robert, Lindemann, Dirk, Mayer, Jens, Stoye, Jonathan, Tristem, Michael, Teycheney, Pierre-Yves, Dasgupta, Idranil, Geering, Andrew, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail, Richert-Pöggeler, Katja, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Stavolone, Livia (2017) Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses. Technical Report. International Committee on Taxonomy of Viruses (ICTV). (doi:10.13140/RG.2.2.24914.04804)

taxonomy

Teycheney, Pierre-Yves, Geering, Andrew D.W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562, Stavolone, Livia and Umber, Marie (2020) ICTV virus taxonomy profile: caulimoviridae. Journal of General Virology, 101 (10). pp. 1025-1026. ISSN 0022-1317 (Print), 1465-2099 (Online) (doi:10.1099/jgv.0.001497)

The International Committee on Taxonomy of Viruses (ICTV)

Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562, Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H. (2018) Ortervirales: A new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92 (12). 00515-00518. ISSN 0022-538X (Print), 1098-5514 (Online) (doi:10.1128/JVI.00515-18)

transgenic resistance

Patil, Basavaprabu L., Ogwok, Emmanuel, Wagaba, Henry, Mohammed, Ibrahim U., Yadav, Jitender S., Bagewadi, Basavaraj, Taylor, Nigel J., Kreuze, Jan F., Maruthi, M.N. ORCID: https://orcid.org/0000-0002-8060-866X, Alicai, Titus and Fauquet, Claude M. (2010) RNAi-mediated resistance to diverse isolates belonging to two virus species involved in Cassava brown streak disease. Molecular Plant Pathology, 12 (1). pp. 31-41. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:10.1111/j.1364-3703.2010.00650.x)

viruses

Patil, Basavaprabu L., Ogwok, Emmanuel, Wagaba, Henry, Mohammed, Ibrahim U., Yadav, Jitender S., Bagewadi, Basavaraj, Taylor, Nigel J., Kreuze, Jan F., Maruthi, M.N. ORCID: https://orcid.org/0000-0002-8060-866X, Alicai, Titus and Fauquet, Claude M. (2010) RNAi-mediated resistance to diverse isolates belonging to two virus species involved in Cassava brown streak disease. Molecular Plant Pathology, 12 (1). pp. 31-41. ISSN 1464-6722 (Print), 1364-3703 (Online) (doi:10.1111/j.1364-3703.2010.00650.x)

vitamin A

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

vitamin A deficiencies

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)

whitefly-transmitted crinivirus

Clark, Christopher A., Davis, Jeffrey A., Abad, Jorge A., Cuellar, Wilmer J., Fuentes, Segundo, Kreuze, Jan F., Gibson, Richard, Mukasa, Settumba B., Tugume, Arthur K., Tairo, Fred Donati and Valkonen, Jari P.T. (2012) Sweetpotato viruses: 15 years of progress on understanding and managing complex diseases. Plant Disease, 96 (2). pp. 168-185. ISSN 0191-2917 (doi:10.1094/PDIS-07-11-0550)