Items where Author is "Bömer, Moritz"

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Arabidopsis thaliana Badna-PCR badnavirus Betaflexiviridae Biomass cell cycle cell suspension culture cell wall 25 proteins closed‑tube reverse transcription loop‑mediated isothermal amplification (CT-RT-LAMP) COI1 Complete genome denaturing gradient gel electrophoresis (DGGE) Detection diagnosis diagnostic assay Diagnostics Dioscorea Dioscorea rotundata Dioscorea spp. DNA extraction endogenous badnaviral elements Endogenous Dioscorea bacilliform virus Endogenous pararetrovirus Endogenous pararetrovirus (EPRV) Episomal badnavirus Flowering time GEBP-like (GPL) proteins Ghana HTS In vitro culture Integration Isothermal amplification jasmonate leaf growth regulation methyl jasmonate (MeJA) multiplex PCR next-generation sequencing Nigeria Phylogeny plant growth Potyvirus primary metabolism Rapid diagnostics Recombinase polymerase amplification Recombination RNA-Seq Rolling circle amplification Rosette Sequence diversity Storekeeper stress–signalling Sturdiness Sub-Saharan Africa Virus virus detection West Africa yam Yam mosaic virus YMV

Number of items: 90.

Arabidopsis thaliana

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, O’Brien, José A., Pérez-Salamó, Imma, Krasauskas, Jovaras, Finch, Paul, Briones, Andrea, Daudi, Arsalan, Souda, Puneet, Tsui, Tjir-Li, Whitelegge, Julian P., Bolwell, G. Paul and Devoto, Alessandra (2018) COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in Arabidopsis. Annals of Botany, 122 (7). pp. 1117-1129. ISSN 0305-7364 (Print), 1095-8290 (Online) (doi:10.1093/aob/mcy109)

Badna-PCR

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu, Rathnayake, Ajith, Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Lava Kumar, P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rolling circle amplification to screen yam germplasm for badnavirus infections and to amplify and characterise novel badnavirus genomes. Bio-protocol, 8 (1). ISSN 2331-8325 (Online) (doi:10.21769/BioProtoc.2672)

badnavirus

Silva, Goncalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Nkere, Chukwuemeka K., Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2022) Homing in on endogenous badnaviral elements: development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. ISSN 1664-462X (Online) (doi:10.3389/fpls.2022.846989)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105. pp. 54-66. ISSN 0885-5765 (Print), 1096-1178 (Online) (doi:10.1016/j.pmpp.2018.06.003)

Turaki, Aliyu A., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm. Viruses, 9 (7). p. 181. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v9070181)

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Turaki, Aliyu A., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2016) A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses. Viruses, 8:188. pp. 1-22. ISSN 1999-4915 (Print), 1999-4915 (Online) (doi:10.3390/v8070188)

Betaflexiviridae

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2019) Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6):167. ISSN 2223-7747 (Print), 2223-7747 (Online) (doi:10.3390/plants8060167)

Biomass

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Uhrig, Joachim F., Jach, Guido and Müller, Kai J. (2011) Increased vegetative development and sturdiness of storekeeper-transgenic tobacco. Open Life Sciences, 6 (3). pp. 342-351. ISSN 2391-5412 (doi:10.2478/s11535-011-0009-9)

cell cycle

cell suspension culture

cell wall 25 proteins

closed‑tube reverse transcription loop‑mediated isothermal amplification (CT-RT-LAMP)

Nkere, Chukwuemeka K., Oyekanmi, Joshua O., Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Atiri, Gabriel I., Onyeka, Joseph, Maroya, Norbert G., Seal, Susan E. and Kumar, P. Lava (2018) Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP). Archives of Virology, 163 (4). pp. 1057-1061. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-018-3706-0)

COI1

Complete genome

Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947 and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2017) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology. ISSN 0304-8608 (Print), 1432-8798 (Online) (doi:10.1007/s00705-017-3605-9)

denaturing gradient gel electrophoresis (DGGE)

Detection

diagnosis

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Nkere, Chukwuemeka, Kumar, P. Lava and Seal, Susan E. ORCID: https://orcid.org/0000-0002-3952-1562 (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods, 222. pp. 138-144. ISSN 0166-0934 (doi:10.1016/j.jviromet.2015.06.011)

diagnostic assay

Diagnostics

Dioscorea

Dioscorea rotundata

Dioscorea spp.

Nkere, Chukwuemeka K., Otto, Emannuel, Atiri, Gabriel I., Onyeka, Joseph, Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 and Kumar, Lava P. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology, 23:100156. ISSN 2214-6628 (Online) (doi:10.1016/j.cpb.2020.100156)

DNA extraction

endogenous badnaviral elements

Endogenous Dioscorea bacilliform virus

Endogenous pararetrovirus

Endogenous pararetrovirus (EPRV)

Episomal badnavirus

Flowering time

GEBP-like (GPL) proteins

Ghana

HTS

In vitro culture

Integration

Isothermal amplification

Silva, Gonçalo ORCID: https://orcid.org/0000-0001-5544-2947, Oyekanmi, Joshua, Nkere, Chukwuemeka K., Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Kumar, Lava P. and Seal, Susan ORCID: https://orcid.org/0000-0002-3952-1562 (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry, 546. pp. 17-22. ISSN 0003-2697 (Print), 1096-0309 (Online) (doi:10.1016/j.ab.2018.01.019)

jasmonate

Noir, Sandra, Bömer, Moritz ORCID: https://orcid.org/0000-0003-1003-9622, Takahashi, Naoki, Ishida, Takashi, Tsui, Tjir-Li, Balbi, Virginia, Shanahan, Hugh, Sugimoto, Keiko and Devoto, Alessandra (2013) Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode. Plant Physiology, 161 (4). pp. 1930-1951. ISSN 0032-0889 (Print), 1532-2548 (Online) (doi:10.1104/pp.113.214908)