bacterial genomics

Muloi, Dishon, Wee, Bryan, McClean, Deirdre, Ward, Melissa, Pankhurst, Louise, Phan, Hang, Ivens, Alasdair, Kivali, Velma, Kiyong'a, Alice, Ndinda, Christine, Gitahi, Nduhiu, Ouko, Tom, Hassell, James, Imboma, Titus, Akoko, James, Murungi, Maurice, Njoroge, Samuel, Muinde, Patrick, Nakamura, Yukiko, Alumasa, Lorren, Furmage, Erin, Kaitho, Titus, Ohgren, Elin, Amanya, Fredrick, Ogendo, Allan, Wilson, Daniel, Bettridge, Judy ORCID: 0000-0002-3917-4660 , Kiiru, John, Kyobutungi, Catharine, Tacoli, Cecilia, Kang'ethe, Erastus, Davila, Julio, Kariuki, Sam, Robinson, Timothy, Rushton, Jonathan, Woolhouse, Mark and Fevre, Eric (2022) Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape. Nature Microbiology, 7. pp. 581-589. ISSN 2058-5276 (Online) (doi:https://doi.org/10.1038/s41564-022-01079-y)

E coli

Hassell, James M. ORCID: 0000-0002-4710-2827 , Muloi, Dishon M., VanderWaal, Kimberly L. ORCID: 0000-0002-5764-6430 , Ward, Melissa J., Bettridge, Judy ORCID: 0000-0002-3917-4660 , Gitahi, Nduhiu ORCID: 0000-0001-6302-5908 , Ouko, Tom, Imboma, Titus, Akoko, James, Karani, Maurice ORCID: 0000-0001-6467-4352 , Muinde, Patrick ORCID: 0000-0003-3907-7710 , Nakamura, Yukiko ORCID: 0000-0002-3379-0526 , Alumasa, Lorren ORCID: 0000-0002-1723-0510 , Furmaga, Erin, Kaitho, Titus, Amanya, Fredrick, Ogendo, Allan, Fava, Francesco ORCID: 0000-0003-3748-7417 , Wee, Bryan A., Phan, Hang, Kiiru, John, Kang’ethe, Erastus, Kariuki, Sam ORCID: 0000-0003-3209-9503 , Robinson, Timothy, Begon, Michael ORCID: 0000-0003-1715-5327 , Woolhouse, Mark E. J. and Fèvre, Eric M. ORCID: 0000-0001-8931-4986 (2023) Epidemiological connectivity between humans and animals across an urban landscape. Proceedings of the National Academy of Sciences, 120 (29):e2218860120. pp. 1-12. ISSN 0027-8424 (Print), 1091-6490 (Online) (doi:https://doi.org/10.1073/pnas.2218860120)

epidemiology

Muloi, Dishon, Wee, Bryan, McClean, Deirdre, Ward, Melissa, Pankhurst, Louise, Phan, Hang, Ivens, Alasdair, Kivali, Velma, Kiyong'a, Alice, Ndinda, Christine, Gitahi, Nduhiu, Ouko, Tom, Hassell, James, Imboma, Titus, Akoko, James, Murungi, Maurice, Njoroge, Samuel, Muinde, Patrick, Nakamura, Yukiko, Alumasa, Lorren, Furmage, Erin, Kaitho, Titus, Ohgren, Elin, Amanya, Fredrick, Ogendo, Allan, Wilson, Daniel, Bettridge, Judy ORCID: 0000-0002-3917-4660 , Kiiru, John, Kyobutungi, Catharine, Tacoli, Cecilia, Kang'ethe, Erastus, Davila, Julio, Kariuki, Sam, Robinson, Timothy, Rushton, Jonathan, Woolhouse, Mark and Fevre, Eric (2022) Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape. Nature Microbiology, 7. pp. 581-589. ISSN 2058-5276 (Online) (doi:https://doi.org/10.1038/s41564-022-01079-y)

infectious disease

Muloi, Dishon, Wee, Bryan, McClean, Deirdre, Ward, Melissa, Pankhurst, Louise, Phan, Hang, Ivens, Alasdair, Kivali, Velma, Kiyong'a, Alice, Ndinda, Christine, Gitahi, Nduhiu, Ouko, Tom, Hassell, James, Imboma, Titus, Akoko, James, Murungi, Maurice, Njoroge, Samuel, Muinde, Patrick, Nakamura, Yukiko, Alumasa, Lorren, Furmage, Erin, Kaitho, Titus, Ohgren, Elin, Amanya, Fredrick, Ogendo, Allan, Wilson, Daniel, Bettridge, Judy ORCID: 0000-0002-3917-4660 , Kiiru, John, Kyobutungi, Catharine, Tacoli, Cecilia, Kang'ethe, Erastus, Davila, Julio, Kariuki, Sam, Robinson, Timothy, Rushton, Jonathan, Woolhouse, Mark and Fevre, Eric (2022) Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape. Nature Microbiology, 7. pp. 581-589. ISSN 2058-5276 (Online) (doi:https://doi.org/10.1038/s41564-022-01079-y)

mobile genetic elements

Hassell, James M. ORCID: 0000-0002-4710-2827 , Muloi, Dishon M., VanderWaal, Kimberly L. ORCID: 0000-0002-5764-6430 , Ward, Melissa J., Bettridge, Judy ORCID: 0000-0002-3917-4660 , Gitahi, Nduhiu ORCID: 0000-0001-6302-5908 , Ouko, Tom, Imboma, Titus, Akoko, James, Karani, Maurice ORCID: 0000-0001-6467-4352 , Muinde, Patrick ORCID: 0000-0003-3907-7710 , Nakamura, Yukiko ORCID: 0000-0002-3379-0526 , Alumasa, Lorren ORCID: 0000-0002-1723-0510 , Furmaga, Erin, Kaitho, Titus, Amanya, Fredrick, Ogendo, Allan, Fava, Francesco ORCID: 0000-0003-3748-7417 , Wee, Bryan A., Phan, Hang, Kiiru, John, Kang’ethe, Erastus, Kariuki, Sam ORCID: 0000-0003-3209-9503 , Robinson, Timothy, Begon, Michael ORCID: 0000-0003-1715-5327 , Woolhouse, Mark E. J. and Fèvre, Eric M. ORCID: 0000-0001-8931-4986 (2023) Epidemiological connectivity between humans and animals across an urban landscape. Proceedings of the National Academy of Sciences, 120 (29):e2218860120. pp. 1-12. ISSN 0027-8424 (Print), 1091-6490 (Online) (doi:https://doi.org/10.1073/pnas.2218860120)

urbanization

Hassell, James M. ORCID: 0000-0002-4710-2827 , Muloi, Dishon M., VanderWaal, Kimberly L. ORCID: 0000-0002-5764-6430 , Ward, Melissa J., Bettridge, Judy ORCID: 0000-0002-3917-4660 , Gitahi, Nduhiu ORCID: 0000-0001-6302-5908 , Ouko, Tom, Imboma, Titus, Akoko, James, Karani, Maurice ORCID: 0000-0001-6467-4352 , Muinde, Patrick ORCID: 0000-0003-3907-7710 , Nakamura, Yukiko ORCID: 0000-0002-3379-0526 , Alumasa, Lorren ORCID: 0000-0002-1723-0510 , Furmaga, Erin, Kaitho, Titus, Amanya, Fredrick, Ogendo, Allan, Fava, Francesco ORCID: 0000-0003-3748-7417 , Wee, Bryan A., Phan, Hang, Kiiru, John, Kang’ethe, Erastus, Kariuki, Sam ORCID: 0000-0003-3209-9503 , Robinson, Timothy, Begon, Michael ORCID: 0000-0003-1715-5327 , Woolhouse, Mark E. J. and Fèvre, Eric M. ORCID: 0000-0001-8931-4986 (2023) Epidemiological connectivity between humans and animals across an urban landscape. Proceedings of the National Academy of Sciences, 120 (29):e2218860120. pp. 1-12. ISSN 0027-8424 (Print), 1091-6490 (Online) (doi:https://doi.org/10.1073/pnas.2218860120)